Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G48920 74 / 2e-15 TED7 tracheary element differentiation-related 7 (.1) AT1G43790 49 / 2e-07 TED6 tracheary element differentiation-related 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108100 [exp] 149 / 3e-44 AT5G48920 74 / 3e-16 tracheary element differentiation-related 7 (.1) Potri.002G072000 [exp] 52 / 4e-08 AT1G43790 47 / 2e-07 tracheary element differentiation-related 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018925 [exp] 52 / 3e-08 AT1G43790 54 / 4e-10 tracheary element differentiation-related 6 (.1) Lus10028626 [exp] 44 / 6e-05 AT5G48920 51 / 7e-08 tracheary element differentiation-related 7 (.1) Lus10029760 [exp] 43 / 8e-05 AT1G43790 55 / 8e-10 tracheary element differentiation-related 6 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G060700.1 pacid=42805086 polypeptide=Potri.005G060700.1.p locus=Potri.005G060700 ID=Potri.005G060700.1.v4.1 annot-version=v4.1 ATGGCTCCTCTTGATAACTATGACTACAACTTCCCATATTTTCCTCTACCACCACCGCATAATCCTCCATCCCCTCCAAAAGTTGTGCCACCTCATAATT ATCCATCCCCTCCAAAAGGGTCCCCACCCCATAATCCTCCGCCACCACACATTATACCCTCCCCTCCAAAAGTTGTCCCACCTCATAATTATCCATCCCC TCCAAAAGGGTCCCCACCCCATAATCCTCCGCCACCACACATTAAACCCTCCCCTCCAAAAGTTCCTCCACCACATCATCCAATTACTCCACCATCCCCA TTCCCAGTGCCAGCAACCCCACCCAATCATCCATTTCATCCACCACCACCCCATCACATTCCTCCACCATCACCACCTCATATTATTCCACCTGCACCCT CTCATGTTATTCCACCTCCACCGCCAACACCAGGACATCATTCAACTGTTATAATTGTTGTCTTTGTCTCACTTGGTGGCCTATTCTTTCTTGCATTCCT CTCTGTTGCTCTCTGTTGCTTCATTAAGAAGAAAAAGAAGAAAACGGTTCAGAAAACTGAAATCTTAGAGTTTGATGAGCATACTAAAGTCCAGGAAGCC ATTATTCCAGGCCCACATGGTGAGAAAATCACAGTACTAAACATTGAAGAGGATGTGCATCTTGTGGAGGAGATTAAGAAAAATGAAAAACTGGCTGAAG GTTCGCACATTAAATTGGCACATGATCATCCCCTGGATTCTGATATAGCAACATCCTCTTCTCGGTCCAATCAGCAGCATCTCGAGCACAAGGTCTGA
AA sequence Show only first row Show all	>Potri.005G060700.1 pacid=42805086 polypeptide=Potri.005G060700.1.p locus=Potri.005G060700 ID=Potri.005G060700.1.v4.1 annot-version=v4.1 MAPLDNYDYNFPYFPLPPPHNPPSPPKVVPPHNYPSPPKGSPPHNPPPPHIIPSPPKVVPPHNYPSPPKGSPPHNPPPPHIKPSPPKVPPPHHPITPPSP FPVPATPPNHPFHPPPPHHIPPPSPPHIIPPAPSHVIPPPPPTPGHHSTVIIVVFVSLGGLFFLAFLSVALCCFIKKKKKKTVQKTEILEFDEHTKVQEA IIPGPHGEKITVLNIEEDVHLVEEIKKNEKLAEGSHIKLAHDHPLDSDIATSSSRSNQQHLEHKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G48920		TED7	tracheary element differentiat...		Potri.005G060700 [exp]	0	1
					Potri.008G213600 [exp]	1.00	0.8191
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Potri.005G120800 [exp]	2.82	0.8176
AT5G06200		CASP4	Casparian strip membrane domai...		Potri.016G075300 [exp]	3.31	0.7428
AT2G32940		AGO6	ARGONAUTE 6, Argonaute family ...		Potri.014G159400 [exp]	7.21	0.7712	AGO902
AT5G03260		LAC11	laccase 11 (.1)		Potri.007G023300 [exp]	10.39	0.7260
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.003G162801 [exp]	10.58	0.7520
AT3G20390			endoribonuclease L-PSP family ...		Potri.001G435700 [exp]	16.30	0.7576
AT1G48050		KU80, ATKU80	ARABIDOPSIS THALIANA KU80 HOMO...		Potri.002G148200 [exp]	21.81	0.7399
AT3G12890		ASML2	activator of spomin::LUC2 (.1)		Potri.001G136700 [exp]	23.10	0.7897
AT3G14470			NB-ARC domain-containing disea...		Potri.018G003502 [exp]	24.73	0.7272

Compare expression of checked genes

Potri.005G060700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.