Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00120 150 / 1e-45 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G09750 145 / 4e-43 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 125 / 5e-34 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67060 122 / 7e-34 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G50330 120 / 1e-33 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G43175 82 / 1e-18 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G01310 84 / 3e-18 bHLH APTX, bHLH140 APRATAXIN-like (.1) AT2G14760 82 / 3e-18 bHLH bHLH084 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G33880 82 / 5e-18 bHLH RSL2, bHLH085 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) AT1G27740 80 / 8e-18 bHLH bHLH054, ROOT HAIR DEFECTIVE 6-LIKE 4(RSL4) root hair defective 6-like 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G108000 [exp] 298 / 3e-103 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 139 / 2e-40 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G125000 [exp] 122 / 9e-34 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G027300 [exp] 121 / 2e-33 AT5G67060 141 / 6e-41 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G191800 [exp] 123 / 8e-33 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G138900 [exp] 117 / 7e-32 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G102600 [exp] 91 / 8e-23 AT5G01310 112 / 4e-29 APRATAXIN-like (.1) Potri.016G120800 [exp] 90 / 2e-22 AT5G01310 109 / 3e-28 APRATAXIN-like (.1) Potri.017G126800 [exp] 81 / 5e-18 AT5G37800 203 / 3e-63 ARABIDOPSIS THALIANA RHD SIX-LIKE 1, RHD SIX-LIKE 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033488 [exp] 167 / 7e-52 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042647 [exp] 150 / 2e-44 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 148 / 6e-44 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012670 [exp] 124 / 6e-35 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10003500 [exp] 107 / 3e-27 AT3G21330 192 / 5e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10009745 [exp] 103 / 5e-26 AT3G21330 112 / 2e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10002213 [exp] 87 / 4e-21 AT5G01310 108 / 8e-28 APRATAXIN-like (.1) Lus10003386 [exp] 89 / 3e-20 AT5G01310 107 / 1e-24 APRATAXIN-like (.1) Lus10001068 [exp] 82 / 3e-18 AT4G33880 179 / 2e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1) Lus10004315 [exp] 82 / 5e-18 AT4G33880 179 / 3e-53 ROOT HAIR DEFECTIVE 6-LIKE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G060900.2 pacid=42803951 polypeptide=Potri.005G060900.2.p locus=Potri.005G060900 ID=Potri.005G060900.2.v4.1 annot-version=v4.1 ATGGATTTCAATCAAGCTAAATTCAACCACACATGGAATCTTGATATGTCCATGGAAGATCAAATTCTTCATCATGACCAGCTTCCCTTTAACTCAATTT GGCCTAGCTGCCCTCTGCAAACACAGCAAACACAAATTCCAGCTTCAAGCCAAACACCAATCTCAACCTTTCTTGGTGACCAAATATGCAACAATACAGA GGAGGAGGAGGATGAGCCGGAAGAAGAGCTGGGAGCTATGAAAGAAATGATGTATAGAATTGCCGCGATGCAGCCAGTAGAGATAGATCCGGCCACGATT CGCAAGCCAAAAAGACGAAACGTTAGGATTAGCGATGACCCCCAGAGCGTGGCTGCGCGTCTTAGGCGAGAAAGGATAAGTGAAAAGATCAGAATTCTAC AAAGGCTTGTTCCTGGTGGAAGAAAAATGGACACTGCTTCAATGCTAGAAGAAGCTATCCGTTACGTTAAGTTCTTGAAAAGGCAAATTCGCCTGCTTCA ACCTAACCATCATCAGCAGCACCAACCATGCACTACCAATGGAGACTGGCAAATTCCATACAGCAATAAACCTCTTGATTCTATCACCACCACTCCATCC CTCCTCGAACCCCGAGCCGGAGGCCTCGGATACATTCTTGGTGGGAATACCGGGGGCAATCCCTTGTGCTTTAATCATGAGGTAATTAGTGATTAG
AA sequence Show only first row Show all	>Potri.005G060900.2 pacid=42803951 polypeptide=Potri.005G060900.2.p locus=Potri.005G060900 ID=Potri.005G060900.2.v4.1 annot-version=v4.1 MDFNQAKFNHTWNLDMSMEDQILHHDQLPFNSIWPSCPLQTQQTQIPASSQTPISTFLGDQICNNTEEEEDEPEEELGAMKEMMYRIAAMQPVEIDPATI RKPKRRNVRISDDPQSVAARLRRERISEKIRILQRLVPGGRKMDTASMLEEAIRYVKFLKRQIRLLQPNHHQQHQPCTTNGDWQIPYSNKPLDSITTTPS LLEPRAGGLGYILGGNTGGNPLCFNHEVISD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00120	bHLH	IND1, GT140, bH...	INDEHISCENT, EMBRYO SAC DEVELO...		Potri.005G060900 [exp]	0	1
AT2G16390		DMS1, CHR35, DR...	DEFECTIVE IN RNA-DIRECTED DNA ...		Potri.004G159100 [exp]	8.12	0.7503
AT4G22030			F-box family protein with a do...		Potri.004G009500 [exp]	22.22	0.7319
					Potri.007G051401 [exp]	23.66	0.7004
AT5G06750			Protein phosphatase 2C family ...		Potri.006G192600 [exp]	42.60	0.6621
AT4G38140			RING/U-box superfamily protein...		Potri.009G170460 [exp]	69.49	0.5352
AT1G52565			unknown protein		Potri.006G069100 [exp]	71.97	0.5937
AT1G72670		IQD8	IQ-domain 8 (.1)		Potri.001G197101 [exp]	91.67	0.5418
AT3G52890		KIPK	KCBP-interacting protein kinas...		Potri.006G114900 [exp]	102.52	0.5574
AT3G22910			ATPase E1-E2 type family prote...		Potri.016G009101 [exp]	111.78	0.5826
AT5G10530			Concanavalin A-like lectin pro...		Potri.007G004500 [exp]	112.14	0.6147

Compare expression of checked genes

Potri.005G060900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.