Plant FIBer expression Database

Potri.005G061200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G13275 62 / 1e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G107500
[exp]
99 / 4e-29 AT3G13275 62 / 6e-15 unknown protein
Potri.011G166250
[exp]
86 / 3e-24 AT3G13275 38 / 4e-05 unknown protein
Potri.001G469401
[exp]
65 / 9e-16 AT3G13275 / unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020466
[exp]
73 / 5e-19 AT3G13275 64 / 1e-15 unknown protein
Lus10007090
[exp]
71 / 3e-18 AT3G13275 65 / 1e-15 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G061200.3 pacid=42803435 polypeptide=Potri.005G061200.3.p locus=Potri.005G061200 ID=Potri.005G061200.3.v4.1 annot-version=v4.1
ATGTGCTGTGGGAAGAGGGTGTGCATGTTGTGCACATGTGTGGTACTGGTGGCGATCCTGATAGGGTTGTTGTTTGGTTTTGGAATTTACAAGAATGGGT
TTCACAAGTTGAAGGATGCTTTTCATGAATGTGATTCTAGTGTCAGTGGTTCACTTTGTGGAGCTGGAATTGGAAGGCCTTTCATGGGTTATGCTCCTCC
TCCTCCTCCTTTCTAG
AA sequence
>Potri.005G061200.3 pacid=42803435 polypeptide=Potri.005G061200.3.p locus=Potri.005G061200 ID=Potri.005G061200.3.v4.1 annot-version=v4.1
MCCGKRVCMLCTCVVLVAILIGLLFGFGIYKNGFHKLKDAFHECDSSVSGSLCGAGIGRPFMGYAPPPPPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G13275 unknown protein Potri.005G061200
[exp]
0 1
AT5G01225 unknown protein Potri.016G112700
[exp]
5.29 0.8096
AT1G71140 MATE efflux family protein (.1... Potri.004G093400
[exp]
10.19 0.8121
Potri.014G192701
[exp]
16.79 0.8040
AT5G14920 Gibberellin-regulated family p... Potri.015G071500
[exp]
18.43 0.7526
AT2G36870 XTH32 xyloglucan endotransglucosylas... Potri.016G098600
[exp]
19.18 0.7919 XTH32.2
AT5G55360 MBOAT (membrane bound O-acyl t... Potri.006G009600
[exp]
20.63 0.7838
AT3G18030 ATHAL3A HALOTOLERANCE DETERMINANT 3, A... Potri.015G089600
[exp]
25.74 0.7573
AT3G52870 IQ calmodulin-binding motif fa... Potri.016G034100
[exp]
30.33 0.7800
AT5G22580 Stress responsive A/B Barrel D... Potri.004G187500
[exp]
30.98 0.7915
Potri.018G101800
[exp]
32.83 0.7641

Potri.005G061200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.