Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55750 384 / 2e-129 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) AT3G61420 379 / 8e-128 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107400 [exp] 625 / 0 AT1G55750 645 / 0.0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020465 [exp] 451 / 1e-155 AT1G55750 607 / 0.0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1) Lus10007089 [exp] 362 / 7e-121 AT1G55750 546 / 0.0 BSD domain (BTF2-like transcription factors, Synapse-associated proteins and DOS2-like proteins) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03909 [poplar] [flax] BSD BSD domain CL0266 [poplar] [flax] PH PF08567 [poplar] [flax] PH_TFIIH TFIIH p62 subunit, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G061432.1 pacid=42803910 polypeptide=Potri.005G061432.1.p locus=Potri.005G061432 ID=Potri.005G061432.1.v4.1 annot-version=v4.1 ATGGCAAGCGGGCAAGTGTCAAAACGAGTCAAGTACAAGAGCTCAGTGAAAGACGCTGGCACTCCTGGTCGACTATTTTTGACTTTGGAGAGGTTAATGT TCAAGCCTAACAGTCCTAATTCTGCTACAAAGCTTAATATGGAGTTTAGATTCATTAAAAATCATAGGTACACTAAGGAGGGATCAAATAAAGCACCAAT GCTTAATCTCACTTCGAGTCAGGGTATGAATTACATATTTGAGTTTGAAAGTTATGATGATCTCCACGTTTGTAAAGAGTGTGTGGGCAAAGCCCTTTCG AAGACCGGAGAGACACCAAAGCCTGTAGACACTTCTGAAGTTCCCTCTGAACAACCTAGTACAGAAGAACTGCTTTCCAGGATGAATATGCTGCGAGAAA ATAGCGAGTTGCAGAAGCTTCATAAGCGGTTTGTGAGTGATGGTGTGTTGACAGAAGCAGAATTTTGGGCAACTAGGAAGAAGTTGCTTGGTGGGAACAC TAGCAAAAAGTCAAAACAACGGACAGGCCTTAAAAGCGTCATGCTTTCAGACACCAAGCCCTCAACTGACGGTCGAACAAACAAAGTCACATTTACTTTG ACGCCTGAGATTGTTCGTGAGATTTTTGCAGAGAAACCAGCAGTTCACCAAGCATACTTGACTTTAGTTCCCAAAAAGATGTCAGAAAGGGATTTCTGGA GCAAATATTGTAGAGCAGAATACCTCCAGCATGCAAAAAATGCTAATGCTGCGGCAGCAGCAGCAGCAGAAGCTGCTGAAGATGAGGAGCTTGCTCTTTT CCTGAAACCTGACAATATTTTGGCCAGCGAAACTCGGTGGAAGATCAGAGGTGTTGATCCAACTCTAGACATGGAAGCTGATGAAGGGGATGATTATACA CATCTTCCAGATCATGGCATCGTCCGTGACGGTAGCAAGGAAATAACCGAATTGCAGCATGAACTATGTAGAAGAACTCTGTCACAGGACCTAAACAGGC ATGCTGCTGTTGTTCTTCAAGGAACACCTATAGATGAGGAGCAATTGAAAGACACACAGACTGTAGCAGAGGCACTTGAACGGTCAAAACAGGAATACTT CAAATGA
AA sequence Show only first row Show all	>Potri.005G061432.1 pacid=42803910 polypeptide=Potri.005G061432.1.p locus=Potri.005G061432 ID=Potri.005G061432.1.v4.1 annot-version=v4.1 MASGQVSKRVKYKSSVKDAGTPGRLFLTLERLMFKPNSPNSATKLNMEFRFIKNHRYTKEGSNKAPMLNLTSSQGMNYIFEFESYDDLHVCKECVGKALS KTGETPKPVDTSEVPSEQPSTEELLSRMNMLRENSELQKLHKRFVSDGVLTEAEFWATRKKLLGGNTSKKSKQRTGLKSVMLSDTKPSTDGRTNKVTFTL TPEIVREIFAEKPAVHQAYLTLVPKKMSERDFWSKYCRAEYLQHAKNANAAAAAAAEAAEDEELALFLKPDNILASETRWKIRGVDPTLDMEADEGDDYT HLPDHGIVRDGSKEITELQHELCRRTLSQDLNRHAAVVLQGTPIDEEQLKDTQTVAEALERSKQEYFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55750			BSD domain (BTF2-like transcri...		Potri.005G061432 [exp]	0	1
AT4G31930			Mitochondrial glycoprotein fam...		Potri.006G261601 [exp]	1.00	0.8983
					Potri.010G242200 [exp]	3.87	0.8464
AT1G02335		GL22	germin-like protein subfamily ...		Potri.008G084300 [exp]	5.29	0.7807
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Potri.019G047300 [exp]	5.65	0.8525
AT3G22470			Pentatricopeptide repeat (PPR)...		Potri.019G062332 [exp]	13.96	0.8171
					Potri.008G164600 [exp]	15.42	0.8066
AT5G65290			LMBR1-like membrane protein (....		Potri.005G072100 [exp]	15.65	0.7492
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165001 [exp]	19.36	0.7843
AT4G27290			S-locus lectin protein kinase ...		Potri.011G037000 [exp]	19.74	0.7831
AT3G13410			unknown protein		Potri.003G223601 [exp]	19.79	0.8118

Compare expression of checked genes

Potri.005G061432 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.