Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09760 718 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G64640 677 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G49180 320 / 6e-102 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G06830 318 / 3e-101 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G27870 317 / 3e-99 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G05610 311 / 1e-97 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 298 / 2e-94 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G14310 294 / 1e-91 ATPME3 pectin methylesterase 3 (.1) AT5G04960 288 / 7e-90 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 288 / 9e-90 ATPMEPCRA methylesterase PCR A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107300 [exp] 780 / 0 AT5G09760 690 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G010464 [exp] 317 / 7e-101 AT5G27870 619 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.011G025400 [exp] 314 / 4e-100 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.018G051400 [exp] 313 / 2e-99 AT3G14310 708 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 312 / 6e-99 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1) Potri.015G127700 [exp] 309 / 1e-98 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 309 / 3e-98 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 306 / 2e-97 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 306 / 1e-96 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005587 [exp] 755 / 0 AT5G09760 689 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033486 [exp] 598 / 0 AT5G09760 597 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013720 [exp] 352 / 1e-116 AT5G09760 322 / 6e-106 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020888 [exp] 347 / 8e-111 AT5G64630 563 / 0.0 FASCIATA 2, Transducin/WD40 repeat-like superfamily protein (.1.2.3) Lus10039314 [exp] 310 / 4e-98 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10013721 [exp] 292 / 8e-96 AT5G09760 278 / 3e-91 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 300 / 1e-94 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10033399 [exp] 300 / 3e-94 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10020677 [exp] 295 / 1e-92 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 293 / 8e-92 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.005G061500.1 pacid=42804704 polypeptide=Potri.005G061500.1.p locus=Potri.005G061500 ID=Potri.005G061500.1.v4.1 annot-version=v4.1 ATGACAACGTTAACAACAAAGCTAACATCAACCACACATTATCCAAGAAAACCAAGAAACTTTCTTCACATTTTCATGGCTTCACTTCTCTCTTTCTCTC TCCTTTCTCTCTTCCTCTTCCTCTCCCTCTCCTCCTCCGCCACTTTAAAGATAAACCACCAACCCCCCACGAAACAAGAACAAAAACAAATATCAAAACC ACCTTCCTTCGCTACAACAACCCCACCTGGGATTCTCCAAGCTTGTAAAGCCACTAGATTACAGGACACTTGTGTCTCTTCTTTGTCTAACGCTAATGTC CCTCAAAATCCAACCCCACTTCAAATCATCCAATCAGCAATCTCTGTCTCCGACACTAACCTCAAAACTGCCCAATCAATGGTCAAGTCTATCCTAGAGT CGTCCGCAGGGAATATAGACCGCACAACAGCCGCAAAAAACTGCATGGAGGTGTTAAACAATTCACAGTACCGTATAACAAGATCAGCGCGTGATGCTTT GCCACGTGGAAAGATCAAGGACGCTAGAGCTTGGATGAGTGCTGCGTTGTTGTACCAATACGATTGTTCCAACGCATTGAAGTACGCGAATGACACGTCT CTCACCAACCAGACGATGTCGTTTTTAGACACCTTGATGAGTTTCTCCAGTAATGCTCTGAGCATGATCGTGTCTTACGATGCTTTTGGTAATGACACCA AGTCGTGGGGCCCACCAAAAACAGAACGGGACGGGGTTTGGGAACTCGGGTCGGGTGGGGATTTCGGTTCAGAGTTTAGGGGTGGGATTCCGTCCAATTT AACGCCGGATGTGACGGTATGTAAGAACGGGAATGACAACGGGTGCTATAAAACGGTGCAGGAGGCGGTCAATACGGCACCGGATAATGAGTGGGGACGT AGGTACGTGATATCTATCAAGGAGGGGGTTTATGACGAGATTGTTAGAGTGCCGTTAGAGAAAAAGAATGTAGTGTTTTTAGGGGATGGGATGGGCAAAA CAGTAATTACAGGGTCGTTAACTGCGGGCCAGCCTGGGATTTCTACCTACAACACAGCAACAGTTGGAGTTCTTGGTGATGGATTTATGGCCAGAGGACT AACAATCCAGAACACAGCAGGAGCCCCCACCCACCAAGCAGTTGCTTTCAGATCAGATGGTGATCTGTCCATTATAGAGAACTGTGAATTCCTAGGCAGT CAAGACACTTTATATGCTCATTCGCTTCGCCAATTCTACAAATCATGCCGCATTGAGGGAAATGTGGACTTCATTTTTGGAAACTCAGCTGCAATATTTC AAGATTGCCAGATATTAGTCCGTCCAAGGCAAGAAAATCCAGAAAAAGGTGAAACTAATGCTGTCACAGCGCATGGCAGGACAGACCCTGCCCAATCAAC GGGTTTCGTCTTTCAAAATTGTCTGATCAATGGAACTGAGGAATATATGGCACTATATAGAAGCAACCCTAGCGTGCACAAGAATTTCTTGGGAAGGCCA TGGAAGGAATACTCAAGGACTGTTTTTGTACACTGTAACTTGGAAGCTCTTGTAACACCACAAGGATGGTTGCCATGGAGTGGAGGTTTTGCACTTGAAA CACTTTACTATGGAGAATTTGAGAATTCTGGACCAGGATCTAATTCGTCTCAGAGAGTAACATGGAGTAGTCAGATTCCTGCACAGCATGTAGATGCATA TTCAGTGCAGAATTTCATTCAAGGAGACGAGTGGATTCCAACGTCTTCTTGA
AA sequence Show only first row Show all	>Potri.005G061500.1 pacid=42804704 polypeptide=Potri.005G061500.1.p locus=Potri.005G061500 ID=Potri.005G061500.1.v4.1 annot-version=v4.1 MTTLTTKLTSTTHYPRKPRNFLHIFMASLLSFSLLSLFLFLSLSSSATLKINHQPPTKQEQKQISKPPSFATTTPPGILQACKATRLQDTCVSSLSNANV PQNPTPLQIIQSAISVSDTNLKTAQSMVKSILESSAGNIDRTTAAKNCMEVLNNSQYRITRSARDALPRGKIKDARAWMSAALLYQYDCSNALKYANDTS LTNQTMSFLDTLMSFSSNALSMIVSYDAFGNDTKSWGPPKTERDGVWELGSGGDFGSEFRGGIPSNLTPDVTVCKNGNDNGCYKTVQEAVNTAPDNEWGR RYVISIKEGVYDEIVRVPLEKKNVVFLGDGMGKTVITGSLTAGQPGISTYNTATVGVLGDGFMARGLTIQNTAGAPTHQAVAFRSDGDLSIIENCEFLGS QDTLYAHSLRQFYKSCRIEGNVDFIFGNSAAIFQDCQILVRPRQENPEKGETNAVTAHGRTDPAQSTGFVFQNCLINGTEEYMALYRSNPSVHKNFLGRP WKEYSRTVFVHCNLEALVTPQGWLPWSGGFALETLYYGEFENSGPGSNSSQRVTWSSQIPAQHVDAYSVQNFIQGDEWIPTSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09760			Plant invertase/pectin methyle...		Potri.005G061500 [exp]	0	1
AT5G12330		LRP1	LATERAL ROOT PRIMORDIUM 1, Lat...		Potri.001G276200 [exp]	7.07	0.7678
AT4G11270			Transducin/WD40 repeat-like su...		Potri.001G098700 [exp]	9.00	0.6742
AT5G18550	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.008G215700 [exp]	11.53	0.6803
AT1G08440			Aluminium activated malate tra...		Potri.001G217400 [exp]	30.13	0.6927
AT3G25500		AHF1, AFH1, ATF...	ARABIDOPSIS THALIANA FORMIN HO...		Potri.017G009900 [exp]	32.49	0.6511
AT3G22142			Bifunctional inhibitor/lipid-t...		Potri.006G008300 [exp]	33.10	0.6746
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.007G060300 [exp]	36.05	0.6252	Pt-ATPLDDELTAA.1
AT5G57820			zinc ion binding (.1)		Potri.001G042000 [exp]	37.01	0.6673
AT5G13140			Pollen Ole e 1 allergen and ex...		Potri.001G060500 [exp]	42.40	0.6376
AT5G52950			unknown protein		Potri.012G033800 [exp]	44.69	0.6486

Compare expression of checked genes

Potri.005G061500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.