Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18660 863 / 0 PGSIP1, GUX1 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) AT1G77130 745 / 0 PGSIP2, GUX3 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) AT4G33330 464 / 7e-157 PGSIP3, GUX2 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) AT1G54940 404 / 7e-134 PGSIP4 plant glycogenin-like starch initiation protein 4 (.1) AT1G08990 399 / 4e-132 PGSIP5 plant glycogenin-like starch initiation protein 5 (.1) AT5G18480 125 / 4e-30 PGSIP6 plant glycogenin-like starch initiation protein 6 (.1) AT1G60470 89 / 5e-19 ATGOLS4 galactinol synthase 4 (.1) AT1G09350 86 / 4e-18 ATGOLS3 galactinol synthase 3 (.1) AT1G56600 82 / 7e-17 ATGOLS2 galactinol synthase 2 (.1) AT4G26250 81 / 2e-16 ATGOLS6 galactinol synthase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107200 [exp] 1159 / 0 AT3G18660 884 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Potri.005G187900 [exp] 849 / 0 AT1G77130 803 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Potri.014G029900 [exp] 482 / 5e-164 AT4G33330 791 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Potri.013G022900 [exp] 405 / 2e-134 AT1G08990 561 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.005G033500 [exp] 399 / 8e-132 AT1G08990 555 / 0.0 plant glycogenin-like starch initiation protein 5 (.1) Potri.013G049100 [exp] 120 / 1e-28 AT5G18480 661 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Potri.010G150400 [exp] 84 / 2e-17 AT2G47180 519 / 0.0 galactinol synthase 1 (.1) Potri.014G116800 [exp] 80 / 4e-16 AT2G47180 568 / 0.0 galactinol synthase 1 (.1) Potri.008G189400 [exp] 78 / 2e-15 AT1G60470 545 / 0.0 galactinol synthase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020890 [exp] 884 / 0 AT3G18660 828 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10018922 [exp] 801 / 0 AT1G77130 847 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10028623 [exp] 785 / 0 AT1G77130 830 / 0.0 glucuronic acid substitution of xylan 3, plant glycogenin-like starch initiation protein 2 (.1) Lus10033485 [exp] 642 / 0 AT3G18660 677 / 0.0 glucuronic acid substitution of xylan 1, plant glycogenin-like starch initiation protein 1 (.1.2.3) Lus10021731 [exp] 479 / 3e-162 AT4G33330 803 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10042658 [exp] 476 / 3e-161 AT4G33330 801 / 0.0 glucuronic acid substitution of xylan 2, plant glycogenin-like starch initiation protein 3 (.1.2) Lus10029932 [exp] 392 / 8e-129 AT1G54940 527 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10031507 [exp] 379 / 3e-124 AT1G54940 542 / 0.0 plant glycogenin-like starch initiation protein 4 (.1) Lus10027949 [exp] 120 / 1e-28 AT5G18480 635 / 0.0 plant glycogenin-like starch initiation protein 6 (.1) Lus10000817 [exp] 111 / 2e-27 AT5G18480 329 / 2e-111 plant glycogenin-like starch initiation protein 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.005G061600.4 pacid=42804942 polypeptide=Potri.005G061600.4.p locus=Potri.005G061600 ID=Potri.005G061600.4.v4.1 annot-version=v4.1 ATGGGTGGCGCACCGGGTTCGGTTGAGCCTAGGCATAGGCTATCTGCATCATTTGAAGATTTATACAAAAGAAGGTTAACAAGATATAAAGTTAAAGGTG TTCAAAAGCCCTTCAACATCCCCATCCAAGATAGAAGTCCTTGTTTCAAGTTCCCACTAATCAAATTAGTCCTTGTGGTCATTATCGGTGGCACTGTGGT ATCACTCTTATACTCTCCAGATGTTGATCAACTATCTCACCCAGGTTCAAGACAAAATTTTGTGAACAGATGGATTTGGGGGGGATTGGATCCTAGATAT GTATCAGATTTAGATGTGAACTGGGATGATGTGATGAAAGTCATTGAGAAGCTTGGTGAAAAGAATGACTATCAGGGAATTGGTCTTCTAAACTTCAATA ACAGTGAAATCAGTTATTGGAAGCACCTTATGCCTGACGCTACACATGTTGCTCTTCAACTAGACTATGCTGACAAGAACATGACCTGGGATTCATTATA TCCAGAATGGATTGATGAGGAACAAGAAAAAGAAGTTCCTGTTTGCCCATCTCTACCGAAACCTGAGACTCCTAGAAAACGACTTGACCTCATCGCTGTG AAGCTTCCTTGCAGAAATGAGTGGAATTGGTCGAGAGATGTTGCTCGGTTGCACTTGCAGCTAGCAGCAGCTAGTCTTGCAGCCTCTGCCAGAGGGTTTT ATCCAGTCCATTTGCTCTTTATCACCGCGCGCTTTCCCATACCGAACCTCTTCACTTGCAAGGAACTTGTTGTACGAGATGGGAATGTTTGGTTATACAA GCCTGATGTGAACGTTTTGAGAGACAAACTCCAGCTCCCAGCTGGCTCTTGTGAACTTTCACTTCCTCTCGGAGACAAAGAACGGGCTTATTCAGGGAAT CCACGTCGAGAAGCGTATACAACGATTCTCCATTCTGCTCATGTTTATGTCTGTGGAGCCATTGCTGCAGCACAAAGCATTCGCTTGTCAGGCTCAACTC GAGACCTTGTCATACTTGTTGACGAAACTATCAGTGTTTACCACAGAAGTGGACTTGAGGCAGCTGGATGGAAAATCAGGACAATTCAAAGAATACGGAA TCCAAAAGCTGAGAAGGATGCATATAATGAATGGAATTATAGCAAGTTCCGGTTATGGCAGCTGACAGACTATGACAAGATCATTTTCATCGATGCTGAT TTACTTATACTTAGGAACATCGATTTCTTATTTGGCATGCCAGAAATATCCGCAACAGGGAACAATGCTACTCTTTTTAACTCGGGTGTGATGGTCATTG AGCCTTCAAACTGCACATTCAATCTTTTGATGGAACATATTAACGAGATCGAATCCTATAATGGTGGAGATCAAGGCTATCTGAATGAGATCTTTACATG GTGGCATCGTATTCCAAAACACATGAACTTCTTAAAACATTTCTGGATTGGTGATGAGGAAGAGGTTAAGCAAAAGAAAACTAGCCTTTTCGGAGCCGAG CCTCCAATTCTCTATGCCCTTCACTATCTTGGTGTAAAGCCATGGTTGTGCTTCCGAGACTACGATTGCAACTGGAATGTGGACATATTTCAAGAGTTTG CAAGTGATATTGCTCATGAAAAGTGGTGGAGAGTATATGATGCAATGCCTGAGCAGTTGCATCAGTTTTGTTCCTTGAAATCGAAGCAAAAGGCACAACT AGAATATGATCGAAGAGAAGCTGAGAAGGCAAACTACACAGATGGTCATTGGAAAATCAAAGTTCAAGACCGTCGCTTAAAGAAATGTATTGACAATGTC TGCAACTGGAAGAGTATGTTAAAACACTGGGGCGAGACGAATTGGACTGATGATGAATTTCTTAATCCATCACCACCAGCTATTAGCACAGCATCTCTTT CTGGCCTGTGA
AA sequence Show only first row Show all	>Potri.005G061600.4 pacid=42804942 polypeptide=Potri.005G061600.4.p locus=Potri.005G061600 ID=Potri.005G061600.4.v4.1 annot-version=v4.1 MGGAPGSVEPRHRLSASFEDLYKRRLTRYKVKGVQKPFNIPIQDRSPCFKFPLIKLVLVVIIGGTVVSLLYSPDVDQLSHPGSRQNFVNRWIWGGLDPRY VSDLDVNWDDVMKVIEKLGEKNDYQGIGLLNFNNSEISYWKHLMPDATHVALQLDYADKNMTWDSLYPEWIDEEQEKEVPVCPSLPKPETPRKRLDLIAV KLPCRNEWNWSRDVARLHLQLAAASLAASARGFYPVHLLFITARFPIPNLFTCKELVVRDGNVWLYKPDVNVLRDKLQLPAGSCELSLPLGDKERAYSGN PRREAYTTILHSAHVYVCGAIAAAQSIRLSGSTRDLVILVDETISVYHRSGLEAAGWKIRTIQRIRNPKAEKDAYNEWNYSKFRLWQLTDYDKIIFIDAD LLILRNIDFLFGMPEISATGNNATLFNSGVMVIEPSNCTFNLLMEHINEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWIGDEEEVKQKKTSLFGAE PPILYALHYLGVKPWLCFRDYDCNWNVDIFQEFASDIAHEKWWRVYDAMPEQLHQFCSLKSKQKAQLEYDRREAEKANYTDGHWKIKVQDRRLKKCIDNV CNWKSMLKHWGETNWTDDEFLNPSPPAISTASLSGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.005G061600 [exp]	0	1
AT5G67210		IRX15-L	IRX15-LIKE, Protein of unknown...		Potri.007G047000 [exp]	1.00	0.9662
AT2G38500			2-oxoglutarate (2OG) and Fe(II...		Potri.016G134500 [exp]	2.00	0.9564
AT1G76250			unknown protein		Potri.005G249600 [exp]	2.23	0.9459
AT1G52760		LysoPL2	lysophospholipase 2 (.1)		Potri.001G175000 [exp]	3.31	0.9364
					Potri.006G056101 [exp]	3.46	0.9465
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.018G052500 [exp]	3.46	0.9459
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.006G035400 [exp]	3.74	0.9418	TUB17,TUB6.1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.007G107200 [exp]	4.89	0.9364
AT2G41820			Leucine-rich repeat protein ki...		Potri.006G051700 [exp]	5.29	0.9193
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.005G141500 [exp]	5.65	0.9418

Compare expression of checked genes

Potri.005G061600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.