Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-MAP3.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53570 566 / 0 MAPKKK3, MAP3KA MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) AT1G63700 419 / 6e-136 EMB71, MAPKKK4, YDA YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) AT5G66850 327 / 2e-102 MAPKKK5 mitogen-activated protein kinase kinase kinase 5 (.1) AT1G54960 288 / 9e-89 MAPKKK2, ANP2 MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASES 2, NPK1-related protein kinase 2 (.1) AT1G09000 289 / 2e-88 MAPKKK1, ANP1 MAP KINASE KINASE KINASE 1, NPK1-related protein kinase 1 (.1) AT3G06030 276 / 2e-83 AtANP3, MAPKKK12, ANP3 NPK1-related protein kinase 3 (.1) AT4G08500 272 / 9e-83 ARAKIN, ATMEKK1, MAPKKK8, MEKK1 MAPK/ERK kinase kinase 1 (.1) AT4G08470 246 / 2e-73 MEKK3, MAPKKK10 MAPK/ERK kinase kinase 3 (.1) AT4G08480 242 / 4e-70 MEKK2, MAPKKK9 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) AT4G12020 243 / 2e-68 WRKY MEKK4, MAPKKK11, ATWRKY19, WRKY19 MAPK/ERK KINASE KINASE 4, MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 11, protein kinase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106800 [exp] 898 / 0 AT1G53570 582 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Potri.015G146700 [exp] 422 / 9e-137 AT1G63700 826 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.012G143900 [exp] 422 / 2e-136 AT1G63700 766 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.001G102900 [exp] 412 / 5e-133 AT1G63700 868 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.003G129000 [exp] 400 / 2e-128 AT1G63700 850 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Potri.007G039800 [exp] 319 / 7e-100 AT5G66850 511 / 3e-173 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.005G135100 [exp] 316 / 3e-98 AT5G66850 589 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.014G035500 [exp] 305 / 1e-93 AT5G66850 453 / 4e-149 mitogen-activated protein kinase kinase kinase 5 (.1) Potri.002G129100 [exp] 299 / 2e-91 AT5G66850 441 / 5e-145 mitogen-activated protein kinase kinase kinase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002096 [exp] 619 / 0 AT2G13680 1077 / 0.0 ARABIDOPSIS THALIANA GLUCAN SYNTHASE-LIKE 2, callose synthase 5 (.1) Lus10000829 [exp] 569 / 0 AT1G53570 537 / 0.0 MAP KINASE KINASE KINASE 3, mitogen-activated protein kinase kinase kinase 3 (.1.2.3.4.5) Lus10032279 [exp] 420 / 5e-136 AT1G63700 904 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10024645 [exp] 418 / 2e-135 AT1G63700 905 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10027496 [exp] 412 / 4e-133 AT1G63700 855 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10014976 [exp] 405 / 5e-131 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10038858 [exp] 376 / 3e-120 AT1G63700 668 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10039250 [exp] 378 / 4e-120 AT1G63700 818 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10009339 [exp] 316 / 5e-98 AT5G66850 568 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1) Lus10019635 [exp] 315 / 6e-98 AT5G66850 561 / 0.0 mitogen-activated protein kinase kinase kinase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G062500.1 pacid=42804262 polypeptide=Potri.005G062500.1.p locus=Potri.005G062500 ID=Potri.005G062500.1.v4.1 annot-version=v4.1 ATGCCTGCTTGGTGGGGTAAAAAGAGCAGCAAGAGCAAAGAAGGGAGTAATCAAGAGAACCCACATGGAAAAAATGATAAAAAACTCTTTAAAATCAAAG AAAACAAGAGGAGGAGCAGTCTTGATGAGGCGGCTTTGAGGAAGAATTCACCACGTGCGAACAGGGAATTTTCTGGCAGTGGTGGCTTATCCGCGTTTTC GGGTTTTGATTCGGATGCAGGTGAAAAAAGAGGGCTTCCTCTGCCCAAACCATTCACGAGTGATCTTGGTGGTGGAGGAGGAGGAGTCGGGTTTGGATCT GGGTCGGTTTCTGTTTCTAGTGTTAGCTCTTACGGGTCATCTGGAGGTGAAGATCATGATAATAATCAGAGTAGTAATGGTCTGTTTGATGGTTACAGGT TATCTGTAGATCATAAAGGACACGGTGGGGGTTCAAGGAGTCCTGGTCCAGGTTCGAGGAGTCCTGTTCCAGGTTCGAGGAGTCCTGTTCCAGGTTCGAG AAGTCCTGCTCCAGGCTCGAGAGCAGCAAGCAGGCCTACTTCACCTCTCCATCAACTGTTGGGTGCTTTAAGCATAGACTCCTCAACTGGGAGGCTGGAA GATGGGAAGAACGAATGTCATCCGCTGCCTCTTCCACCAGGTTCTCCCACTAGCCCTCCTTCCTTGCCTGGCCCAAGAACTGCTGGAGCGACAGAGATGT CTACCTTGTCAAGATGGAAGAAAGGAAAGCTCCTAGGAAGGGGAACTTTTGGACATGTTTATCTTGGATTTAACAGCGGGAGTGGGCAGATGTGCGCAAT AAAAGAAGTCACGGTTATTTCAGATGATTCAACATCAAAAGAATGTCTCAAGCAGCTGAACCAGGAGATAAATTTGCTTAGTCAGCTGTCACATGCAAAC ATTGTTCGTTACTATGGAAGTGAACTGAGTGAAGAAAGGCTTTCAGTTTATCTGGAGTATGTCTCTGGTGGTTCAGTCCACAAGTTACTTCAAGAATATG GTGCCTTTAAGGAACCGGTTATTCAAAATTATACCAGGCAGATTCTTTCTGGGCTTGCCTATTTGCATGGAAGAAATACAGTTCACAGGGATATCAAAGG TGCAAACATATTAGTGGACCCTAATGGTGAAATCAAGTTGGTGGACTTTGGCATGGCTAAGCATATCACGGCATGCTCTTCAATGCTTTCATTCAAGGGA AGTCCTTACTGGATGGCGCCTGAGGTGGTGATGAATACAAATGGCTACAGTCTTGCAGTAGATATATGGAGCTTGGGATGCACGCTTCTTGAAATGGCAA CATCAAAACCACCATGGAGTCATTATGAAGGGGTTGCTGCAATATTTAAAATTGGAAACAGCAAAGATATGCCAGATATACCTGATTATCTTTCCAATGA TGCAAAAAGTTTTATAAAGCTATGCCTGCAACGAGATCCATCAGCGCGGCCGACAGCCTTTCAGTTGTTGGACCACCCGTTTATTCGGGACCAAGCAACA ACAAGAGTTGCGAACATCAACATTACTAGGGATGCCTTTCCCAGAACTTTTGATGGAAGCCGCACACCGCCAGTCTTAGATCTGCACTCCAACCGAACAA GTGCCAATTCTTGGGATGGAGATTTTGCAATGAAGCCAGGGGTTAATAGTAATACCAGAGCATTGAAGAATCCAAGGGATGATGGCGGAATGATCACATC TATGCCTGTATCTCCTTGTTCTAGCCCACTGCGACAACATGGGTCTGCATACAGGAATTATTTTTCTCCTCACTCACCCTATGCTATGGTAGGACAAAGC AGCTACCATGTAAGCGACCCCTCATTACATCCAATAAGACAAACTACATATACTCACGATCTTTTCTTTGATACCACCTTATTAAAAGTTCAAACACCTG GTACATCACCAAGAACGAGACCCATTTGA
AA sequence Show only first row Show all	>Potri.005G062500.1 pacid=42804262 polypeptide=Potri.005G062500.1.p locus=Potri.005G062500 ID=Potri.005G062500.1.v4.1 annot-version=v4.1 MPAWWGKKSSKSKEGSNQENPHGKNDKKLFKIKENKRRSSLDEAALRKNSPRANREFSGSGGLSAFSGFDSDAGEKRGLPLPKPFTSDLGGGGGGVGFGS GSVSVSSVSSYGSSGGEDHDNNQSSNGLFDGYRLSVDHKGHGGGSRSPGPGSRSPVPGSRSPVPGSRSPAPGSRAASRPTSPLHQLLGALSIDSSTGRLE DGKNECHPLPLPPGSPTSPPSLPGPRTAGATEMSTLSRWKKGKLLGRGTFGHVYLGFNSGSGQMCAIKEVTVISDDSTSKECLKQLNQEINLLSQLSHAN IVRYYGSELSEERLSVYLEYVSGGSVHKLLQEYGAFKEPVIQNYTRQILSGLAYLHGRNTVHRDIKGANILVDPNGEIKLVDFGMAKHITACSSMLSFKG SPYWMAPEVVMNTNGYSLAVDIWSLGCTLLEMATSKPPWSHYEGVAAIFKIGNSKDMPDIPDYLSNDAKSFIKLCLQRDPSARPTAFQLLDHPFIRDQAT TRVANINITRDAFPRTFDGSRTPPVLDLHSNRTSANSWDGDFAMKPGVNSNTRALKNPRDDGGMITSMPVSPCSSPLRQHGSAYRNYFSPHSPYAMVGQS SYHVSDPSLHPIRQTTYTHDLFFDTTLLKVQTPGTSPRTRPI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Potri.005G062500 [exp]	0	1	Pt-MAP3.1
AT2G38640			Protein of unknown function (D...		Potri.006G113400 [exp]	4.69	0.7482
AT5G01960			RING/U-box superfamily protein...		Potri.013G160000 [exp]	6.32	0.6917
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.017G142400 [exp]	9.48	0.7456
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Potri.011G152500 [exp]	12.96	0.7192
AT3G14080			Small nuclear ribonucleoprotei...		Potri.003G068400 [exp]	19.62	0.6684
AT1G79270		ECT8	evolutionarily conserved C-ter...		Potri.010G175500 [exp]	22.49	0.7482
AT3G08780			unknown protein		Potri.016G126200 [exp]	34.78	0.6534
AT3G46580		MBD05, MDB5, MD...	METHYL-CPG-BINDING DOMAIN PROT...		Potri.001G240100 [exp]	41.71	0.7043	MBD905,Pt-MBD5.1
AT1G48790		AMSH1	associated molecule with the S...		Potri.015G045800 [exp]	42.70	0.6356
AT2G20370		AtMUR3, MUR3, K...	MURUS 3, KATAMARI 1, Exostosin...		Potri.002G256200 [exp]	45.05	0.6985

Compare expression of checked genes

Potri.005G062500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.