Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33460 347 / 4e-121 ABCI10, ATNAP13, EMB2751 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) AT3G62150 77 / 8e-16 ABCB21, PGP21 ATP-binding cassette B21, P-glycoprotein 21 (.1) AT4G01830 76 / 2e-15 ABCB5, PGP5 ATP-binding cassette B5, P-glycoprotein 5 (.1) AT1G65410 74 / 7e-15 ABCI13, TGD3, ATNAP11 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) AT2G47000 74 / 9e-15 PGP4 ,MDR4, ABCB4, ATPGP4 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) AT2G36910 73 / 2e-14 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT3G28345 71 / 8e-14 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT2G47800 71 / 1e-13 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G28390 71 / 2e-13 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28380 70 / 3e-13 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G093600 [exp] 77 / 1e-15 AT2G36910 2120 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.006G123900 [exp] 75 / 6e-15 AT2G36910 2138 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) Potri.014G113200 [exp] 74 / 1e-14 AT3G62150 1871 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.014G137000 [exp] 73 / 1e-14 AT1G65410 483 / 2e-172 TRIGALACTOSYLDIACYLGLYCEROL 3, ATP-binding cassette I13, non-intrinsic ABC protein 11 (.1) Potri.011G133800 [exp] 73 / 2e-14 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.014G113500 [exp] 72 / 3e-14 AT3G62150 1879 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.010G045900 [exp] 72 / 4e-14 AT1G70610 1033 / 0.0 ATP-binding cassette B26, transporter associated with antigen processing protein 1 (.1) Potri.014G113000 [exp] 72 / 4e-14 AT3G62150 1767 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Potri.019G132800 [exp] 72 / 4e-14 AT5G58270 1002 / 0.0 STARIK 1, ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 3, ATP-binding cassette B25, ABC transporter of the mitochondrion 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000827 [exp] 381 / 9e-135 AT4G33460 362 / 5e-127 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10002094 [exp] 310 / 6e-107 AT4G33460 304 / 9e-105 embryo defective 2751, ATP-binding cassette I10, ABC transporter family protein (.1) Lus10010074 [exp] 87 / 7e-19 AT1G02520 1591 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10004530 [exp] 79 / 2e-16 AT1G02520 682 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10035195 [exp] 77 / 3e-16 AT5G14100 333 / 2e-115 ARABIDOPSIS THALIANANON-INTRINSIC ABC PROTEIN 14, ATP-binding cassette I11, non-intrinsic ABC protein 14 (.1) Lus10010068 [exp] 78 / 6e-16 AT3G62150 1820 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10004519 [exp] 76 / 2e-15 AT1G02520 636 / 0.0 multi-drug resistance 8, ATP-binding cassette B11, P-glycoprotein 11 (.1) Lus10009989 [exp] 75 / 6e-15 AT2G47000 1754 / 0.0 MULTIDRUG RESISTANCE 4, ARABIDOPSIS P-GLYCOPROTEIN 4, ATP-binding cassette B4, ATP binding cassette subfamily B4 (.1) Lus10009988 [exp] 75 / 7e-15 AT3G62150 1896 / 0.0 ATP-binding cassette B21, P-glycoprotein 21 (.1) Lus10023929 [exp] 74 / 1e-14 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Potri.005G062800.1 pacid=42803611 polypeptide=Potri.005G062800.1.p locus=Potri.005G062800 ID=Potri.005G062800.1.v4.1 annot-version=v4.1 ATGGATCTCCCCGCTCTGTTTCGTGCTGCTGCTCCTCCCAGCATTCCCCCTCTTCACTCCGCTCCATCCCCAAGGAGTAATTACGTTATTGAGAAAGACA ATAATATTGCCATTGAAGGTAGGAATCTAAACTTCTCAATCAAAACAAGGAAAGGGGATTTAGTTCCCATTCTTAAGGACTGTTCTCTTAGTATTCCATC TGGGCAGCTTTGGATGCTTCTTGGACCTAATGGGTGTGGAAAATCTACCCTTTTGAAGATTCTGGCTGGTCTTTTGAACCCAACTAGTGGAACCTTGTAT CTGAAAAGGCCTAAGAGCTTTGTTTTTCAGAATCCAGACCATCAGGTTGTGATGCCTACAGTCGAAGCTGATGTATCATTTGGCCTTGGGAAGTTGAACC TGACTGAGGATGAAGTTAAGTGCACGGTGTCAAAAGCTTTGGATGCTGTGGGAATGTCTGCCTACATGCAAAGGCCAGTTCAAACTCTCAGCGGCGGTCA GAAACAAAGGGTTGCGATTGCTGGTGCTCTAGCTGAAGCATGTAAAGTGCTCTTATTGGATGAGCTAACAACATTCTTAGATGAAACTGATCAGGTTGGT GTGATCAAAGCCGTAAAGAACTCCTTGAATGCATCTGATGATGTTACGGCTCTATGGGTGACCCATCGATTGGAAGAACTTGAATATGCAGACGGTGCTT TATACATGGAAAATGGGAAGGTTGTCAAGCAGGGTGATGGATCAAGCATAATGAATTTCATCGAAGCCAGACAATCCTCTTACATCAACCGAATCAATTC TTGA
AA sequence Show only first row Show all	>Potri.005G062800.1 pacid=42803611 polypeptide=Potri.005G062800.1.p locus=Potri.005G062800 ID=Potri.005G062800.1.v4.1 annot-version=v4.1 MDLPALFRAAAPPSIPPLHSAPSPRSNYVIEKDNNIAIEGRNLNFSIKTRKGDLVPILKDCSLSIPSGQLWMLLGPNGCGKSTLLKILAGLLNPTSGTLY LKRPKSFVFQNPDHQVVMPTVEADVSFGLGKLNLTEDEVKCTVSKALDAVGMSAYMQRPVQTLSGGQKQRVAIAGALAEACKVLLLDELTTFLDETDQVG VIKAVKNSLNASDDVTALWVTHRLEELEYADGALYMENGKVVKQGDGSSIMNFIEARQSSYINRINS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33460		ABCI10, ATNAP13...	embryo defective 2751, ATP-bin...		Potri.005G062800 [exp]	0	1
AT3G43660			Vacuolar iron transporter (VIT...		Potri.001G456000 [exp]	10.77	0.8062
AT5G55510			Mitochondrial import inner mem...		Potri.011G088500 [exp]	13.41	0.8109
AT2G21250			NAD(P)-linked oxidoreductase s...		Potri.009G125100 [exp]	17.02	0.8331	S6PDH.2
AT3G19220		CYO1 ,SCO2	SNOWY COTYLEDON 2, SHI-YO-U ME...		Potri.009G102400 [exp]	21.40	0.8926
AT2G24020			Uncharacterised BCR, YbaB fami...		Potri.018G105600 [exp]	25.21	0.8891
AT5G17560			BolA-like family protein (.1)		Potri.013G074100 [exp]	29.74	0.8693
AT3G15090			GroES-like zinc-binding alcoho...		Potri.001G373200 [exp]	36.60	0.7861
AT1G30130			unknown protein		Potri.011G084000 [exp]	37.81	0.8070
AT4G04210		PUX4	plant UBX domain containing pr...		Potri.011G011300 [exp]	38.18	0.7885
AT4G17370			Oxidoreductase family protein ...		Potri.003G078500 [exp]	38.82	0.8020

Compare expression of checked genes

Potri.005G062800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.