Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20015 560 / 0 Eukaryotic aspartyl protease family protein (.1) AT1G25510 369 / 5e-123 Eukaryotic aspartyl protease family protein (.1) AT3G18490 361 / 8e-120 Eukaryotic aspartyl protease family protein (.1) AT1G01300 342 / 1e-112 Eukaryotic aspartyl protease family protein (.1) AT3G61820 322 / 6e-105 Eukaryotic aspartyl protease family protein (.1) AT5G10760 229 / 2e-69 Eukaryotic aspartyl protease family protein (.1) AT5G10770 223 / 4e-67 Eukaryotic aspartyl protease family protein (.1) AT2G03200 210 / 4e-62 Eukaryotic aspartyl protease family protein (.1) AT5G33340 199 / 4e-58 CDR1 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1) AT1G79720 199 / 9e-58 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106300 [exp] 783 / 0 AT3G20015 575 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.010G128200 [exp] 372 / 1e-124 AT1G25510 622 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.015G051800 [exp] 370 / 2e-123 AT3G18490 585 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G171700 [exp] 347 / 2e-114 AT1G01300 642 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.014G099400 [exp] 341 / 4e-112 AT1G01300 633 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G306200 [exp] 230 / 4e-70 AT2G03200 501 / 1e-176 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 226 / 6e-68 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.019G002100 [exp] 223 / 2e-67 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.018G014900 [exp] 218 / 6e-65 AT5G10770 408 / 3e-139 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017362 [exp] 485 / 2e-168 AT3G20015 549 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10010157 [exp] 483 / 1e-167 AT3G20015 545 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10003999 [exp] 346 / 2e-114 AT1G01300 636 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10042978 [exp] 300 / 2e-96 AT3G18490 504 / 3e-176 Eukaryotic aspartyl protease family protein (.1) Lus10030246 [exp] 251 / 2e-78 AT1G01300 472 / 3e-165 Eukaryotic aspartyl protease family protein (.1) Lus10035961 [exp] 235 / 8e-72 AT2G03200 525 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10025702 [exp] 237 / 3e-70 AT2G03200 529 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041621 [exp] 214 / 3e-63 AT1G79720 510 / 1e-178 Eukaryotic aspartyl protease family protein (.1) Lus10042426 [exp] 213 / 3e-63 AT5G10770 553 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10024903 [exp] 207 / 4e-61 AT5G33340 449 / 3e-156 CONSTITUTIVE DISEASE RESISTANCE 1, Eukaryotic aspartyl protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF00026 [poplar] [flax] Asp Eukaryotic aspartyl protease
Representative CDS sequence Show only first row Show all	>Potri.005G063000.1 pacid=42804752 polypeptide=Potri.005G063000.1.p locus=Potri.005G063000 ID=Potri.005G063000.1.v4.1 annot-version=v4.1 ATGAAAAACATGTCAGCCTCTCGAGCACTACTTCTCTTGGTGGTGGCGATGCTACTACATCTTGTAACATGTACCACCACCACCACCACCACCACCACCA CATCGACCGCCACCACTCATCATAACACCATCACCAAAGCCAAAACCAAAACTAGTTCGTACCCTGATTTTCAATTATTGAACGTGAAACAAGCAATAAC AGAAACAAAGATTAGGCCTCTAAAACCATCCCTGTATCAAGAACTATCCATGAATATTCCAAACGATAGTGGAAGTGAGGGAAAGCAGAAACTGAAACTT GTCCACAGAGACAAGGTATCCTTCAACAACAAGTTTCACAATCATAGCCACGTTTTTCATGCACGCATGCAAAGAGACGTGAAGAGGGTGGTTAGCCTTA TCCGCCGCGTTTCAAGTGGCAGTACCGCCAGCTATGGGGTGGAGGATTTTGGGTCGGAGGTGGTGTCAGGCATGGACCAAGGTAGTGGGGAATATTTTGT TAGAATAGGAGTTGGAAGTCCACCAAGAAGTCAATACATGGTCATTGATTCAGGTAGTGATATTGTATGGGTTCAATGTAAACCTTGCACCCAATGTTAT CATCAAACCGACCCGCTGTTTGACCCGGCGGACTCAGCTTCTTTTATGGGGGTGTCTTGTAGCTCTGCGGTTTGTGACCAGGTTGATAATGCGGGTTGTA ATTCGGGTCGATGTCGCTACGAGGTGTCATATGGTGATGGGTCGTCCACAAAAGGGACTCTTGCCCTCGAAACACTTACATTGGGAAGAACCGTGGTTCA AAATGTGGCTATCGGATGCGGGCATATGAACCAAGGCATGTTTGTTGGTGCTGCCGGGTTACTGGGTCTTGGAGGAGGATCCATGTCATTTGTGGGTCAA TTGAGTAGGGAAAGGGGGAATGCATTTAGTTATTGTTTAGTGAGTAGGGTGACTAATTCAAATGGATTTCTGGAATTCGGGTCTGAAGCAATGCCCGTGG GAGCTGCCTGGATTCCTTTGATCCGAAACCCACATTCACCGAGCTATTACTATATCGGGCTTTCAGGTCTTGGAGTTGGAGATATGAAGGTGCCAATATC AGAAGACATATTCGAATTAACCGAGCTGGGAAATGGAGGTGTTGTTATGGACACCGGGACGGCTGTGACTCGGTTTCCTACGGTGGCTTACGAGGCATTT CGTGATGCTTTCATAGACCAAACCGGAAACCTCCCCCGGGCTTCTGGAGTATCCATATTTGATACTTGTTATAACTTATTCGGGTTTTTGTCGGTCCGGG TACCAACCGTCTCATTTTACTTCTCAGGTGGGCCAATTCTAACCCTTCCAGCAAATAACTTTTTAATCCCAGTAGACGATGCAGGGACCTTTTGTTTTGC ATTTGCTCCTTCCCCTTCAGGACTTTCCATCCTCGGAAACATTCAACAAGAAGGGATTCAAATCTCCGTCGATGGAGCTAATGAGTTTGTAGGTTTTGGC CCCAATGTTTGCTGA
AA sequence Show only first row Show all	>Potri.005G063000.1 pacid=42804752 polypeptide=Potri.005G063000.1.p locus=Potri.005G063000 ID=Potri.005G063000.1.v4.1 annot-version=v4.1 MKNMSASRALLLLVVAMLLHLVTCTTTTTTTTTTSTATTHHNTITKAKTKTSSYPDFQLLNVKQAITETKIRPLKPSLYQELSMNIPNDSGSEGKQKLKL VHRDKVSFNNKFHNHSHVFHARMQRDVKRVVSLIRRVSSGSTASYGVEDFGSEVVSGMDQGSGEYFVRIGVGSPPRSQYMVIDSGSDIVWVQCKPCTQCY HQTDPLFDPADSASFMGVSCSSAVCDQVDNAGCNSGRCRYEVSYGDGSSTKGTLALETLTLGRTVVQNVAIGCGHMNQGMFVGAAGLLGLGGGSMSFVGQ LSRERGNAFSYCLVSRVTNSNGFLEFGSEAMPVGAAWIPLIRNPHSPSYYYIGLSGLGVGDMKVPISEDIFELTELGNGGVVMDTGTAVTRFPTVAYEAF RDAFIDQTGNLPRASGVSIFDTCYNLFGFLSVRVPTVSFYFSGGPILTLPANNFLIPVDDAGTFCFAFAPSPSGLSILGNIQQEGIQISVDGANEFVGFG PNVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20015			Eukaryotic aspartyl protease f...		Potri.005G063000 [exp]	0	1
AT5G23400			Leucine-rich repeat (LRR) fami...		Potri.010G040200 [exp]	3.46	0.8436
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	6.00	0.8535
AT2G26640		KCS11	3-ketoacyl-CoA synthase 11 (.1...		Potri.006G249200 [exp]	7.74	0.7870
AT5G49525			unknown protein		Potri.005G011400 [exp]	7.74	0.8030
AT4G29360			O-Glycosyl hydrolases family 1...		Potri.002G007300 [exp]	8.60	0.8531
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Potri.009G167800 [exp]	12.96	0.8144
AT4G39790			Protein of unknown function (D...		Potri.005G077700 [exp]	13.22	0.7426
AT5G58520			Protein kinase superfamily pro...		Potri.009G075900 [exp]	26.32	0.7825
AT3G23805		RALFL24	ralf-like 24 (.1)		Potri.001G320700 [exp]	28.93	0.7534
AT3G50410	DOF	OBP1, AtDof3. 4	OBF binding protein 1 (.1)		Potri.007G036400 [exp]	31.93	0.7636	Pt-OBP1.1

Compare expression of checked genes

Potri.005G063000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.