Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09310 189 / 1e-62 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106200 [exp] 120 / 3e-36 AT5G09310 104 / 2e-30 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041297 [exp] 204 / 1e-68 AT5G09310 190 / 3e-63 unknown protein Lus10037415 [exp] 202 / 4e-68 AT5G09310 190 / 3e-63 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10251 [poplar] [flax] PEN-2 Presenilin enhancer-2 subunit of gamma secretase
Representative CDS sequence Show only first row Show all	>Potri.005G063100.1 pacid=42805138 polypeptide=Potri.005G063100.1.p locus=Potri.005G063100 ID=Potri.005G063100.1.v4.1 annot-version=v4.1 ATGGAAGCTTCACAACCGAACACCACCACGGACACCGCGAATCCAAACCCTATCCCTAACAACACCAACTCAATTCTATCATCCACTCCAGTGTGGCCAA CAATCGATGGTCCACTAGGTCTAACAGAAGACGAATCGTTAACCTACGCTCGCAGATTTTACAAATTCGGATTCGCACTCTTGCCTTGGCTTTGGGCTGT CAATTGCTTCTACTTCTGGCCTGTTCTCTTCAATTCTCGCTCCTTCCCTCGCATTCGCCCTTATGTTGTTAGATCAGCAGTTGGGTTCACTGTATTCACA ACTGTTCTTTGTTCATGGGCCTTGACATTTGCCATTGGAGGAGAGCAACTCTTCGGCCCTGTATGGGATAAACTAGTGATGTATAATGTTGCTGACAGAT TAGGCTTGACTGGTTGGATTTAG
AA sequence Show only first row Show all	>Potri.005G063100.1 pacid=42805138 polypeptide=Potri.005G063100.1.p locus=Potri.005G063100 ID=Potri.005G063100.1.v4.1 annot-version=v4.1 MEASQPNTTTDTANPNPIPNNTNSILSSTPVWPTIDGPLGLTEDESLTYARRFYKFGFALLPWLWAVNCFYFWPVLFNSRSFPRIRPYVVRSAVGFTVFT TVLCSWALTFAIGGEQLFGPVWDKLVMYNVADRLGLTGWI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09310			unknown protein		Potri.005G063100 [exp]	0	1
AT5G08060			unknown protein		Potri.004G123700 [exp]	2.82	0.7643
AT4G21105			cytochrome-c oxidases;electron...		Potri.001G460200 [exp]	3.00	0.7736
AT5G60860		AtRABA1f	RAB GTPase homolog A1F (.1)		Potri.001G374000 [exp]	6.00	0.7560	RAB11.4
AT5G11900			Translation initiation factor ...		Potri.006G228100 [exp]	7.34	0.7061
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.018G006100 [exp]	9.38	0.7071	AJH1.3
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.001G097700 [exp]	9.38	0.7474
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	10.95	0.7288
AT1G06760			winged-helix DNA-binding trans...		Potri.010G076800 [exp]	11.74	0.6701
AT3G22630		PRCGB, PBD1	20S proteasome beta subunit D1...		Potri.010G084800 [exp]	16.12	0.7389	PBD2.2
AT2G30050			transducin family protein / WD...		Potri.010G100400 [exp]	16.24	0.6682

Compare expression of checked genes

Potri.005G063100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.