Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33450 189 / 1e-57 MYB ATMYB69 myb domain protein 69 (.1) AT1G17950 176 / 2e-52 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT1G73410 172 / 6e-51 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT5G17800 166 / 6e-48 MYB ATMYB56 myb domain protein 56 (.1) AT1G69560 166 / 8e-48 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT1G26780 164 / 2e-47 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT3G29020 150 / 7e-43 MYB ATMYB110 myb domain protein 110 (.1.2) AT5G67300 125 / 1e-32 MYB ATMYB44, AtMYBr1 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 44, myb domain protein r1 (.1) AT3G50060 121 / 3e-31 MYB ATMYB77 myb domain protein 77 (.1) AT5G39700 118 / 3e-31 MYB ATMYB89 myb domain protein 89 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G106100 [exp] 417 / 2e-146 AT4G33450 207 / 2e-66 myb domain protein 69 (.1) Potri.005G186400 [exp] 223 / 3e-69 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.002G073500 [exp] 195 / 1e-58 AT1G17950 202 / 9e-64 myb domain protein 52 (.1) Potri.012G039400 [exp] 185 / 5e-56 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.015G033600 [exp] 181 / 2e-54 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.017G017600 [exp] 174 / 1e-51 AT1G17950 243 / 3e-81 myb domain protein 52 (.1) Potri.007G134500 [exp] 170 / 3e-50 AT1G17950 246 / 5e-82 myb domain protein 52 (.1) Potri.019G040900 [exp] 172 / 2e-49 AT1G26780 211 / 4e-66 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) Potri.017G085200 [exp] 168 / 2e-47 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031326 [exp] 176 / 2e-51 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10031900 [exp] 176 / 3e-51 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10029746 [exp] 172 / 5e-50 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10028638 [exp] 168 / 1e-48 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10018936 [exp] 167 / 1e-48 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10030452 [exp] 169 / 3e-48 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10026611 [exp] 168 / 8e-48 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10005683 [exp] 161 / 6e-46 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10007503 [exp] 131 / 1e-35 AT4G37260 182 / 2e-56 myb domain protein 73 (.1) Lus10040940 [exp] 128 / 2e-34 AT4G37260 176 / 2e-54 myb domain protein 73 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13921 [poplar] [flax] Myb_DNA-bind_6 Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G063200.1 pacid=42805079 polypeptide=Potri.005G063200.1.p locus=Potri.005G063200 ID=Potri.005G063200.1.v4.1 annot-version=v4.1 ATGTTAAGGTCAAAAAACCAGTGTTTATACATGTATATTTATGTATCTATACATATCTTATCTTGCGTATATAAGAAAAGTGACCTCTCATCTGTAGCCC TAAAACCAATTCCCTCCTGTTCCATCTCTCTCTGCTTATTCATCTTCTTATATTTATTGAAGATCTTCCTCGTGTGGGGTGATTTCTGCCATAATTTTGC AGTTGTGTTAGAATATTTATGTGAGTTTAAGCTTCATGTGATGGAAGATTTTAGGGGTAGCTCAAGCAGTGATAGTGGGAGGACTAGTTGTCATAGAGGG CACTGGAGGCCGGCTGAAGATGAGAAACTTCGGCAACTTGTTGATCAATATGGTCCTCATAATTGGAATTTCATTGCTGAACATCTTCAAGGAAGATCAG GGAAAAGTTGTAGATTGAGATGGTACAACCAACTTGATCCAAATATCAACAAAAGGCCTTTTACAGAAGAAGAGGAAGAAAGGCTCCTAAGAGCTCATCA CATTCAAGGAAATAGATGGGCTTCAATAGCTAGGCTCTTCCCTGGCAGAACCGACAACGCCGTGAAGAATCATTACCATGTTGTTATGGCAAGAAGGAAG CGTGAACGCTGCTTAACTGTCCATGGTAAGAGAAGTAATTTCCAAATCCAATATCCTAGTGATCATCACCATAGAAATAGCAGTACTAATCCTGGTAGAA ATTTCGGGTTCTTTAGGCCACAAGGGTCACCTGACTTTGGTTCTAAATTAGGGTTTCAGAATAATATTATTGAAAGAGCGGGTAATAAGATACCCATGTC CTCAACAAATTCATCTCCTTCTTGGACTAACATTAGTGCTTCAACCATCACAAATGACTCATTAAGTTTTGATGTCTTTGATGCAAAAAGAAAGGATTAT ATTCATTCAAGCTCTTCTTCAATATATCCTAAAGGGGGGCCACTTGCTTTGAATGAATCTCTTCACTGTACTTACCATCCTAGTTCTACCATTGATGGTG GTGATAAGTACCTAAATGTTGTTGGACAACAGATCCCTAACGCTAAGAAAGTTGTCCCTAATAATCATTTTGCATTCACAAGTTATGGTGATGGTTATGG AAGCAATAAAGAAAAGATTATCGAAAGCCAGCTAGTGAGACTCGATAGCGATCATCATGACTCAGCTGCATTGTGGAAATTGCCAATGGCTTCTCAGCAA GAGCAAGGAGATCATGGAGGTCAAGTTAAGAACCAGGACGTTGCCTTTATAGACTTTCTTGGTGTGGGGATCTCTTAG
AA sequence Show only first row Show all	>Potri.005G063200.1 pacid=42805079 polypeptide=Potri.005G063200.1.p locus=Potri.005G063200 ID=Potri.005G063200.1.v4.1 annot-version=v4.1 MLRSKNQCLYMYIYVSIHILSCVYKKSDLSSVALKPIPSCSISLCLFIFLYLLKIFLVWGDFCHNFAVVLEYLCEFKLHVMEDFRGSSSSDSGRTSCHRG HWRPAEDEKLRQLVDQYGPHNWNFIAEHLQGRSGKSCRLRWYNQLDPNINKRPFTEEEEERLLRAHHIQGNRWASIARLFPGRTDNAVKNHYHVVMARRK RERCLTVHGKRSNFQIQYPSDHHHRNSSTNPGRNFGFFRPQGSPDFGSKLGFQNNIIERAGNKIPMSSTNSSPSWTNISASTITNDSLSFDVFDAKRKDY IHSSSSSIYPKGGPLALNESLHCTYHPSSTIDGGDKYLNVVGQQIPNAKKVVPNNHFAFTSYGDGYGSNKEKIIESQLVRLDSDHHDSAALWKLPMASQQ EQGDHGGQVKNQDVAFIDFLGVGIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.005G063200 [exp]	0	1
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	5.09	0.8638
AT5G18830	SBP	ATSPL7, SPL7	squamosa promoter binding prot...		Potri.008G197000 [exp]	12.96	0.8236	Pt-SPL7.2
AT1G22410			Class-II DAHP synthetase famil...		Potri.002G099200 [exp]	14.28	0.8132
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Potri.019G130700 [exp]	14.28	0.8227	C4H1,Pt-CYP73.3
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Potri.008G034800 [exp]	15.49	0.8097
AT3G04810		ATNEK2	NIMA-related kinase 2 (.1.2)		Potri.002G049400 [exp]	15.49	0.8075
AT2G31930			unknown protein		Potri.001G232200 [exp]	16.73	0.8078
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.012G127700 [exp]	19.97	0.7861
AT5G47635			Pollen Ole e 1 allergen and ex...		Potri.006G005600 [exp]	25.98	0.8071
AT5G59350			unknown protein		Potri.008G054400 [exp]	26.11	0.8034

Compare expression of checked genes

Potri.005G063200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.