Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33440 652 / 0 Pectin lyase-like superfamily protein (.1) AT4G23820 469 / 3e-163 Pectin lyase-like superfamily protein (.1) AT3G62110 449 / 6e-155 Pectin lyase-like superfamily protein (.1) AT5G41870 447 / 1e-154 Pectin lyase-like superfamily protein (.1) AT3G48950 417 / 2e-142 Pectin lyase-like superfamily protein (.1) AT3G61490 407 / 3e-138 Pectin lyase-like superfamily protein (.1.2.3) AT4G23500 402 / 3e-136 Pectin lyase-like superfamily protein (.1) AT2G23900 401 / 5e-136 Pectin lyase-like superfamily protein (.1) AT3G16850 397 / 1e-134 Pectin lyase-like superfamily protein (.1) AT1G19170 395 / 3e-133 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105800 [exp] 855 / 0 AT4G33440 642 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.014G112100 [exp] 452 / 4e-156 AT3G62110 649 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.002G186900 [exp] 451 / 1e-155 AT3G62110 666 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G139100 [exp] 444 / 3e-153 AT4G23820 660 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G131700 [exp] 422 / 4e-144 AT3G61490 688 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Potri.001G100000 [exp] 421 / 8e-144 AT4G23500 701 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G211500 [exp] 419 / 1e-143 AT3G16850 509 / 2e-179 Pectin lyase-like superfamily protein (.1) Potri.017G145900 [exp] 416 / 2e-142 AT3G48950 659 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.010G005500 [exp] 411 / 2e-140 AT3G16850 497 / 1e-174 Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003589 [exp] 696 / 0 AT4G33440 649 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014799 [exp] 686 / 0 AT4G33440 630 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038030 [exp] 474 / 7e-165 AT3G62110 632 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10032374 [exp] 448 / 9e-155 AT4G23820 656 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10003890 [exp] 446 / 6e-154 AT4G23820 657 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023101 [exp] 424 / 3e-145 AT4G23820 642 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10017517 [exp] 409 / 5e-139 AT4G23500 675 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10039909 [exp] 409 / 8e-139 AT1G19170 775 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10028766 [exp] 407 / 4e-138 AT3G61490 670 / 0.0 Pectin lyase-like superfamily protein (.1.2.3) Lus10007922 [exp] 404 / 4e-137 AT3G61490 743 / 0.0 Pectin lyase-like superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF12708 [poplar] [flax] Pectate_lyase_3 Pectate lyase superfamily protein
Representative CDS sequence Show only first row Show all	>Potri.005G063400.1 pacid=42803867 polypeptide=Potri.005G063400.1.p locus=Potri.005G063400 ID=Potri.005G063400.1.v4.1 annot-version=v4.1 ATGTTAAAGAAAATGGATTTTGATGAGAAGCAAAGTTTTGTTCTTGGTGGTAATGCAATGATGGTCAAGTTATCAAGATTTTCTTGGCCACCACTTCTTA TCTTGATCACCCTTTTAGCTCTTTTATCCTTTCAAATCACATCCAAGACCGTCTACCCGATAAAGATTGCATTTACTTCTTCGACGTCGAAAGACGATAT CGTGGCCGATTCAAGAACCTGTGTGGGGTTCTTCGGAGAGTTGCCGGAGAGAAAAGCTGTGATATCGATAAAAGATTTTGGTGGGGTTGGTGATGGGAAA ACGTCTAATACCGAAGCGTTTCGGAGGGCGATGAGGTACGTGCAAGGTTTCGGGGAGAGAGGTGGGGCCCAGTTGAATGTGCCCGAAGGAAGATGGGTTA CAGGGAGTTTTAATTTGACAAGTAATTTCACTTTGTTTCTTGAAGAAGGTGCTGTTATTTTGGGGTCTCAGGACCCAAAGGAATGGCCTATCATAGAGCC ATTGCCTTCTTATGGAAGAGGGAGGGAGAGATTAGGGGGGAGACATATTAGCCTTATTCATGGAGATGGCCTCGCAAATGTCGTCATCACAGGAAACAAT GGGACAATTGATGGCCAAGGGAAGATGTGGTGGGAATTATGGTGGAACAGAACATTGGAGCACACCAGAGGCCACCTTGTAGAACTAATGAATTCTCAAG ACATTCTCATCTCCAACCTTACCTTTCGCAATTCTCCATTTTGGACCATTCATCCAATTTACTGCAGCAATCTTGTTGTTAAAGACATGACAATCTTGGC TCCTCTCAATGCCCCAAATACTGATGGTATAGACCCTGATTCAAGCACAAATGTGTGTATTGAGGACTGTTACATTGAGAGTGGGGATGATCTTGTGGCA GTGAAGAGTGGCTGGGACCAATACGGTATAAAAATGGCTCGTCCAAGCTCAAACATTATAATTAGGAGAGTATCGGGAACCACCCCTACTTGCTCTGGGG TTGGAATAGGTAGTGAGATGTCTGGAGGGATTTTTAACGTAACTATTGAAGATTTGCATGTCTGGGATTCTGCTGCCGGTGTGAGAATAAAAACGGACAA AGGCAGAGGAGGATATATAGCAAATATCACTATAAGTGATATAACAATGGAGAGAGTTAAGATACCGATAAGGTTCAGTAGTGGCTCTAATGACCACCCT GATGAAAGATGGGATCCTAAAGCAGTTCCAGTTGTGAAGGGCGTTTCTATCACTAATTTGGTTAGTTTTAATTCAACAAAAGCCCCAGTATTGGAGGGAA TTGAGGATGCACCATTTGGTGGTATATGCATGAAGAATATTAGCTTGCTTGGAGTGGTATCATCTCCTTCATGGCGCTGTGAATTTGTCTCAGGTTTTGC AAATGACGTGTTTCCAACACCGTGTCCTCAGCTGCAGATTGATAACTCTTCATCTTGGTGTTCATACTCTTAA
AA sequence Show only first row Show all	>Potri.005G063400.1 pacid=42803867 polypeptide=Potri.005G063400.1.p locus=Potri.005G063400 ID=Potri.005G063400.1.v4.1 annot-version=v4.1 MLKKMDFDEKQSFVLGGNAMMVKLSRFSWPPLLILITLLALLSFQITSKTVYPIKIAFTSSTSKDDIVADSRTCVGFFGELPERKAVISIKDFGGVGDGK TSNTEAFRRAMRYVQGFGERGGAQLNVPEGRWVTGSFNLTSNFTLFLEEGAVILGSQDPKEWPIIEPLPSYGRGRERLGGRHISLIHGDGLANVVITGNN GTIDGQGKMWWELWWNRTLEHTRGHLVELMNSQDILISNLTFRNSPFWTIHPIYCSNLVVKDMTILAPLNAPNTDGIDPDSSTNVCIEDCYIESGDDLVA VKSGWDQYGIKMARPSSNIIIRRVSGTTPTCSGVGIGSEMSGGIFNVTIEDLHVWDSAAGVRIKTDKGRGGYIANITISDITMERVKIPIRFSSGSNDHP DERWDPKAVPVVKGVSITNLVSFNSTKAPVLEGIEDAPFGGICMKNISLLGVVSSPSWRCEFVSGFANDVFPTPCPQLQIDNSSSWCSYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33440			Pectin lyase-like superfamily ...		Potri.005G063400 [exp]	0	1
AT1G54540			Late embryogenesis abundant (L...		Potri.017G154000 [exp]	7.00	0.9141
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.009G007100 [exp]	7.21	0.9118
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050300 [exp]	14.89	0.9062
AT1G06800		PLA-I{gamma}1	phospholipase A I gamma 1, alp...		Potri.002G044700 [exp]	23.95	0.8900
AT3G25640			Protein of unknown function, D...		Potri.008G114500 [exp]	26.53	0.8971
AT2G48130			Bifunctional inhibitor/lipid-t...		Potri.005G211900 [exp]	26.53	0.9007
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.018G129400 [exp]	27.01	0.8940
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.007G114375 [exp]	27.05	0.8912
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.018G003800 [exp]	29.49	0.9006
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165300 [exp]	31.93	0.8883

Compare expression of checked genes

Potri.005G063400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.