Plant FIBer expression Database

Potri.005G063600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G105401
[exp]
0 / 1 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G063600.1 pacid=42803921 polypeptide=Potri.005G063600.1.p locus=Potri.005G063600 ID=Potri.005G063600.1.v4.1 annot-version=v4.1
ATGGGTGCATGTAAAGCACCCATTTCCAATCTACTCCTCCCTTCACCACCACCCTCACCACCAACTCCAAACCAAAACGCCACCACTAGGCGCCTTCTCC
TGTTCTCCCTTCCATTATTAACAACAGCCACCACTACTAATAATCTTCCTCTTAGTACCACTGGTGCTAAAATAGCAAGTGCAAACTCAAGAATACAGCT
AAACTCTTGTTGGGCTCTAGCAGAGAGCTATGACCCAGTAAGCCAAGCTGAGAAGGAAGCCAGTACTGCCATATCCAGGAGAGTGTCAGAAGCTGTAGAG
TTGTTAGAGAAAGGGAGGGAATTGCAGGCTCGAGGTGACTTCAATGAAGCTCTGCTCTACTTCACTCTGATGGTTGAAAACTACAAAGATTTCGCATTCT
CAGACTATGGAAGAGTGGGGAGAGCACTGTCTCTTTATGAGGTTGGGAACAGAGAAGAAGCAATTGCAGAAATGGAGGACGTTTCAATATCTTTGAAGGG
ATATCCAGAAATACATGCAGCTCTTGCAGCAGCCTTGTATGCGGACAAGCATGCCCTATTACTAGCTGAAAATCAGTTCACCATTGCCACCATGCTCGAT
CCTCACTATACGGACCTGTCATATGTTAAAGAAACTAAGCATTGGCCTCCAAGTCTGGTCAGTTCTTTGCAGCAGTTCATCACACTTTCATAG
AA sequence
>Potri.005G063600.1 pacid=42803921 polypeptide=Potri.005G063600.1.p locus=Potri.005G063600 ID=Potri.005G063600.1.v4.1 annot-version=v4.1
MGACKAPISNLLLPSPPPSPPTPNQNATTRRLLLFSLPLLTTATTTNNLPLSTTGAKIASANSRIQLNSCWALAESYDPVSQAEKEASTAISRRVSEAVE
LLEKGRELQARGDFNEALLYFTLMVENYKDFAFSDYGRVGRALSLYEVGNREEAIAEMEDVSISLKGYPEIHAALAAALYADKHALLLAENQFTIATMLD
PHYTDLSYVKETKHWPPSLVSSLQQFITLS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G063600
[exp]
0 1
AT5G51545 LPA2 low psii accumulation2 (.1) Potri.015G129600
[exp]
2.00 0.9740
AT1G68660 Ribosomal protein L12/ ATP-dep... Potri.008G145500
[exp]
3.46 0.9726
AT2G01590 CRR3 chlororespiratory reduction 3 ... Potri.010G110100
[exp]
4.58 0.9727
AT3G09650 CRM3, HCF152 HIGH CHLOROPHYLL FLUORESCENCE ... Potri.016G085300
[exp]
6.00 0.9610
AT2G46735 unknown protein Potri.002G178100
[exp]
8.00 0.9680
AT2G21195 unknown protein Potri.019G071800
[exp]
8.18 0.9473
AT4G23140 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-li... Potri.004G028400
[exp]
9.79 0.9589
AT5G62140 unknown protein Potri.012G134500
[exp]
10.67 0.9710
AT1G60470 ATGOLS4 galactinol synthase 4 (.1) Potri.008G189400
[exp]
12.04 0.9566
AT2G32830 PHT1;5, PHT5 PHOSPHATE TRANSPORTER 5, phosp... Potri.001G318500
[exp]
12.96 0.9568 Pt-PHT5.1,PtrPHT1-12

Potri.005G063600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.