Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G49780 139 / 3e-37 PUB26 plant U-box 26 (.1) AT3G19380 128 / 4e-33 PUB25 plant U-box 25 (.1) AT2G35930 102 / 5e-24 PUB23 plant U-box 23 (.1) AT5G64660 101 / 1e-23 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT1G71020 100 / 1e-22 ARM repeat superfamily protein (.1.2) AT3G49810 99 / 1e-22 ARM repeat superfamily protein (.1) AT1G23030 100 / 2e-22 PUB11 ARM repeat superfamily protein (.1) AT3G18710 97 / 4e-22 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G37490 97 / 5e-22 ARM repeat superfamily protein (.1) AT5G09800 96 / 1e-21 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105300 [exp] 573 / 0 AT1G49780 157 / 8e-44 plant U-box 26 (.1) Potri.004G140100 [exp] 150 / 3e-41 AT1G49780 517 / 0.0 plant U-box 26 (.1) Potri.009G100200 [exp] 149 / 7e-41 AT1G49780 515 / 0.0 plant U-box 26 (.1) Potri.010G103100 [exp] 110 / 2e-26 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.008G137700 [exp] 101 / 2e-23 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.012G042600 [exp] 100 / 3e-23 AT5G37490 294 / 2e-95 ARM repeat superfamily protein (.1) Potri.007G110600 [exp] 100 / 3e-23 AT5G09800 398 / 6e-137 ARM repeat superfamily protein (.1) Potri.005G057500 [exp] 100 / 5e-23 AT5G09800 385 / 5e-132 ARM repeat superfamily protein (.1) Potri.004G083900 [exp] 100 / 8e-23 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012491 [exp] 102 / 2e-24 AT5G65920 180 / 1e-53 ARM repeat superfamily protein (.1) Lus10010598 [exp] 102 / 7e-24 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10043471 [exp] 103 / 1e-23 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 103 / 2e-23 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10040124 [exp] 96 / 4e-23 AT1G66160 154 / 6e-45 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) Lus10021267 [exp] 99 / 1e-22 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10001079 [exp] 99 / 2e-22 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1) Lus10005810 [exp] 98 / 2e-22 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10042798 [exp] 95 / 3e-21 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10012260 [exp] 96 / 5e-21 AT5G42340 695 / 0.0 Plant U-Box 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.005G063700.2 pacid=42805292 polypeptide=Potri.005G063700.2.p locus=Potri.005G063700 ID=Potri.005G063700.2.v4.1 annot-version=v4.1 ATGGAAGAAGCAGAAATGACTATACCCCACTTGTTCATGTGTCCAATTAGTCTAGAATTGATCAAAGATCCAGTAACTCTATGTACAGGCCAAACTTATG ACAGATCTAGCATAGAAAAATGGCTTGCTGCTGGTAATCTTACATGCCCTGTCACAATGCAGAAACTTCAGGATCCATCCATGGTTCCTAATCACACTCT TCGCCATTTGATTGATCAGTGGCTGCAAATGGGCACTCAGTTTGATCCTGTTTTGTGTACAATTGATTGCTTAGCCTCGTTGAAGAAAAATCTTGAATCA GATGAAGCTACCTTGGAGTACAAGTGTCAAACACTCCAAAAAATCCAAGCTCTAACAGAGGAATCACAATCTGGAAATTCTTGTTTGCTTCAATTAGGCT TCTTGCCTTTATTATTGGAACTACTTTTTGGAAAAACAGAATCCAAACTGTCTCAAGAATGTGTTAAGTTTGCAGAACAAGCTCTTTCTTGGGTCCTAAG ATTGCTGTCACTCGGCGAGTACGAGTATTTAAATATGCTAAACGAAGAGTCTAAATTGGAGTCCTTTCAGGTTTTGTTTGATCAAGGAACTGGCAAGATC AAGAGGAGTTTGTGCCAAGTAATAGAGGCAATATCATCATCCTTGGAGACAAGAGAACTCTGTGCTAAGCTTGGCAAAAACCGCAAACTCTTGAAAGGGC TGATTCTTCTTGTTCACCAAACATATGAGGCATCTGACGCCGGAATAAAAGCTATATCTGCACTATGCTGCTTGGAATCAAATAGACAGAATTTGGTTCA AGAAGGTGTGATAAATAGACTCTTGACCTACATTTTCGATGCCGAAAGACATGAAAGAAATTTGGCACCTAAAGCATTGTCAACAATCGAGCTTCTTCTA GAACTAGAGAGTGCAAAAGCGGCTTTGATCAATAATCCTAATGGTATTAAAGCTCTCATTAAGATGGTCTTTAGGTTTTCAGAGCACGAAGGCAGCGAAA GCGCTGTTCGATCATTGACGATTATATGCACAGATTCTTTACAGGCACGAGAAGAAGCAATTGGTGCAGGAGTTTTAACTCAATTACTTCTGCTTTTGCA GAGCCAGTGTAGTGCTAGGACTAAAACAAAAGCAAGAATGTTACTCAAGCTGCTTAGGTCCAGGTGGGATTAG
AA sequence Show only first row Show all	>Potri.005G063700.2 pacid=42805292 polypeptide=Potri.005G063700.2.p locus=Potri.005G063700 ID=Potri.005G063700.2.v4.1 annot-version=v4.1 MEEAEMTIPHLFMCPISLELIKDPVTLCTGQTYDRSSIEKWLAAGNLTCPVTMQKLQDPSMVPNHTLRHLIDQWLQMGTQFDPVLCTIDCLASLKKNLES DEATLEYKCQTLQKIQALTEESQSGNSCLLQLGFLPLLLELLFGKTESKLSQECVKFAEQALSWVLRLLSLGEYEYLNMLNEESKLESFQVLFDQGTGKI KRSLCQVIEAISSSLETRELCAKLGKNRKLLKGLILLVHQTYEASDAGIKAISALCCLESNRQNLVQEGVINRLLTYIFDAERHERNLAPKALSTIELLL ELESAKAALINNPNGIKALIKMVFRFSEHEGSESAVRSLTIICTDSLQAREEAIGAGVLTQLLLLLQSQCSARTKTKARMLLKLLRSRWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G49780		PUB26	plant U-box 26 (.1)		Potri.005G063700 [exp]	0	1
AT1G28190			unknown protein		Potri.001G070700 [exp]	16.91	0.9450
AT4G03500			Ankyrin repeat family protein ...		Potri.011G133400 [exp]	20.09	0.9393
AT3G26430			GDSL-like Lipase/Acylhydrolase...		Potri.002G083800 [exp]	25.33	0.9388
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.009G064900 [exp]	45.79	0.9307
AT2G31335			unknown protein		Potri.008G162900 [exp]	66.18	0.9278
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.015G099200 [exp]	78.23	0.8963
AT1G29290			unknown protein		Potri.001G393101 [exp]	105.26	0.9254
AT1G67920			unknown protein		Potri.012G044001 [exp]	140.65	0.9239
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219900 [exp]	181.50	0.9204
AT3G20790			NAD(P)-binding Rossmann-fold s...		Potri.003G210900 [exp]	182.43	0.9187

Compare expression of checked genes

Potri.005G063700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.