Plant FIBer expression Database

Potri.005G063750 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G74350 877 / 0 Intron maturase, type II family protein (.1)
AT5G04050 172 / 3e-45 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2)
ATMG00520 80 / 4e-15 ATMG00520.1, MATR Intron maturase, type II family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G043650
[exp]
211 / 1e-57 AT5G04050 742 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2)
Potri.007G062302
[exp]
81 / 1e-15 ATMG00520 1095 / 0.0 Intron maturase, type II family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10021359
[exp]
940 / 0 AT1G74350 838 / 0.0 Intron maturase, type II family protein (.1)
Lus10017036
[exp]
226 / 2e-67 AT1G74350 200 / 1e-58 Intron maturase, type II family protein (.1)
Lus10027263
[exp]
207 / 3e-56 AT5G04050 690 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2)
Lus10038971
[exp]
206 / 6e-56 AT5G04050 704 / 0.0 RNA-directed DNA polymerase (reverse transcriptase) (.1), RNA-directed DNA polymerase (reverse transcriptase) (.2)
Lus10017037
[exp]
179 / 9e-53 AT1G74350 168 / 7e-50 Intron maturase, type II family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0027 RdRP PF00078 RVT_1 Reverse transcriptase (RNA-dependent DNA polymerase)
CL0359 Intron-mat_II PF01348 Intron_maturas2 Type II intron maturase
Representative CDS sequence
>Potri.005G063750.1 pacid=42803418 polypeptide=Potri.005G063750.1.p locus=Potri.005G063750 ID=Potri.005G063750.1.v4.1 annot-version=v4.1
ATGTGGTTTGTTTGGTTGCCAAGAATTTGCAAAGGAAGCTTGCCCAGAAGCAGAATATTGCAAAACATGAATCTTGTTAGGGTCAAGTTATTTGGCTTTT
CTTATATGGGAAGACCTTTAGAAAGATCCAAAGCTTGTGCAGACTATTCTACTCTTGCAGACGTTAATGATAACATTGATAAGGGTACTGGAAAAATGAC
ATTAGCGAAGGACTTAGCTTTTGTTGTTGACGAATCCTCCAAAGCTGATGAGAGAAAAGCGAAGAGTCGAATGGAGCTTAAGAGGTCTCTTGAACTTCGT
ATAAAAAAGAGGGTGAAGGAGCAATATTTTAATGGAAAATTTAAAGATTTAATGACAAAAGTGATTGCAAATCAAGAAACCCTTCATGATGCTTATAATT
GTATTCGGATCAATGCGAATGTCGATATAGCATTAGATAATGATAACATATCTTTTGAATCCATGGAAAAAGAGCTCTCCGGTGGATGTTTTGATGTTGG
TGGAAATACTTTCTCTATTGCAACAAAGGGTGCAAGAAATGAAATCCTTGTCCTTCCAAAGTTAAAGTTGAAAGTTGTTCAAGAGGCTATTAGAATAGTT
TTGGAAGTTGTTTATAGGCCCTACTTTTCCAAAATATCCCATGGTTGTCGAAGTGGACGAGGTCATCATTCAGCATTAAAATACATCACCAAAGATATCT
CTAACCCTGACTGGTGGTTTACATTGATCATAAGCAGAAAGCTGGATACCTGCATCCTTAATAAACTTTTCTCCATAATGGGGGAAAAAATACAAGACCC
CTGCTTATTTGATATGATCCAAGGCATGTTTGATGCCCAGGTACTCAATATGGAATTTGGGGGTTACCTAAAAGGCCATGGTCTTCCGCAAGAGGGAGTG
TTGTCTCCTATATTAATGAACATATACCTTGATGTTTTTGACCATGAATTGCACAGACTTTCAATGAAATATGAAGCTTTGAATCCAGATGTCCATTTTG
GTGGAGAGCAGCTCCACTCCAAGTTGCGCAGCTGGTTTAGGAGGCAGCTGAAAGGAAATGATATTAAAAACAGCAGTAAGGAGGGTTCAAGAATTCATTC
TTGTCGCTTCATGGATGAGTTATTTTTTGCAGTTTCTGGATCCAAAGATGTTGCAATTGATTTCAAGTCTGATGTTGTAAATTACTTGCACAATTGCTTG
CACTTGGATGTTGATAGTGAAGCAGAAATATTACCTAGTGCTGGACCTCAAGCAATTTGCTTTTTGGGCACTTTGATTAGAAGAACTGTGAAAGAAAGTC
CAGCTATAAGGGCTGCCCACAAGTTAAAAGAGAAAGTCAAGTTGTTTGCTTCGCAGAAACAAGAGGCTTGGGATGTTGGGACAGTTAGGATTGGGAAGAA
ATGGTTAGCTCATGGTTTGAGAAAGGTTAAGGAGTCAGAGATCAAACATTTAGCCGATAGAAGCTCTCTTTTGAACCAAATTTCCTGTTTCCGCAAAGCT
GGAATGGAAACTGATCATTGGTACAAGTTCCTACTTAAAGTATGGATGAAAGACATTAAAACCAAAGCAGCAGAGAGTGAGGAATTTGTTTTGTCCAAGT
ATGTTGCTGAACCGGCTGTTCCACAAGAACTCAGAGAATCCTTTTATGAATTTCAGAAGCATGCAGAGGAATATGTTAAATCTGAGACTGCAATGACTCT
TGCTCTTTTGCCACGCTCTAGCTCCTCCTCTGAAACCATTACGGAGATCATTGCTCCTGTTAATGCCATTAAGAAGCGTTTGTTACGATATGGATTGACC
TCTTCCCAAGGTCACTCCCGTGCCATTATTCAACTAATTTTACAAGACAACATCCAGATCATTGATTGGTTTTCGGGTATTGTTTGTCGTTGGCTTAGGT
GGTTTAGTGATTACCAGAACTTCGCTGAGTTAGAGCTCATAATCAGGAATCAAGTTAGGAAATCTTGCATTCGGACTTTAGCAGCAAAGTACCGAGTTCA
TGAAAGTGCAATAGAGAAACGTTTTGATTTAGAACTGAGCAGGATCCCTTCCACCCAAGAGGAAGAGCAAGAGATGGAAAATGAGAAGCCTCACTCTCTA
GCTTTTGATAATGATGAGGCGCTGATGTATGGAATTTCTTATAGCGGCTTATGTTTACTGTCATTAACTAGAATGGTGAGTCAGTCGCGGCCTTGCGGTT
GTTTTGTTATGGGGTGTCCAGCTGCAGCACCAAGTGTTTATACTATTCATGTGATGGAAAGACAGAAGTTCCCTGGATGGAAGACAGGATTTTCAACTTG
TATTCATCCCAGCTTGAATAAAAGGCGAATTGGATTGTGTAAACAGCATCTAACGGATTTATATGTGGGTCAAATATCCCTTCAATCCATTGATTTTAGT
TCATGGAAATGA
AA sequence
>Potri.005G063750.1 pacid=42803418 polypeptide=Potri.005G063750.1.p locus=Potri.005G063750 ID=Potri.005G063750.1.v4.1 annot-version=v4.1
MWFVWLPRICKGSLPRSRILQNMNLVRVKLFGFSYMGRPLERSKACADYSTLADVNDNIDKGTGKMTLAKDLAFVVDESSKADERKAKSRMELKRSLELR
IKKRVKEQYFNGKFKDLMTKVIANQETLHDAYNCIRINANVDIALDNDNISFESMEKELSGGCFDVGGNTFSIATKGARNEILVLPKLKLKVVQEAIRIV
LEVVYRPYFSKISHGCRSGRGHHSALKYITKDISNPDWWFTLIISRKLDTCILNKLFSIMGEKIQDPCLFDMIQGMFDAQVLNMEFGGYLKGHGLPQEGV
LSPILMNIYLDVFDHELHRLSMKYEALNPDVHFGGEQLHSKLRSWFRRQLKGNDIKNSSKEGSRIHSCRFMDELFFAVSGSKDVAIDFKSDVVNYLHNCL
HLDVDSEAEILPSAGPQAICFLGTLIRRTVKESPAIRAAHKLKEKVKLFASQKQEAWDVGTVRIGKKWLAHGLRKVKESEIKHLADRSSLLNQISCFRKA
GMETDHWYKFLLKVWMKDIKTKAAESEEFVLSKYVAEPAVPQELRESFYEFQKHAEEYVKSETAMTLALLPRSSSSSETITEIIAPVNAIKKRLLRYGLT
SSQGHSRAIIQLILQDNIQIIDWFSGIVCRWLRWFSDYQNFAELELIIRNQVRKSCIRTLAAKYRVHESAIEKRFDLELSRIPSTQEEEQEMENEKPHSL
AFDNDEALMYGISYSGLCLLSLTRMVSQSRPCGCFVMGCPAAAPSVYTIHVMERQKFPGWKTGFSTCIHPSLNKRRIGLCKQHLTDLYVGQISLQSIDFS
SWK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G74350 Intron maturase, type II famil... Potri.005G063750
[exp]
0 1
AT1G56690 Pentatricopeptide repeat (PPR)... Potri.013G005400
[exp]
1.41 0.9429
AT3G47840 Tetratricopeptide repeat (TPR)... Potri.007G021700
[exp]
2.00 0.9392
AT3G18840 Tetratricopeptide repeat (TPR)... Potri.009G113500
[exp]
2.44 0.9415
AT4G38440 IYO MINIYO, unknown protein Potri.009G139900
[exp]
2.64 0.9204
AT1G56690 Pentatricopeptide repeat (PPR)... Potri.005G006400
[exp]
4.89 0.9235
AT1G68930 pentatricopeptide (PPR) repeat... Potri.010G136200
[exp]
5.00 0.9259
AT3G61780 EMB1703 embryo defective 1703 (.1) Potri.014G099100
[exp]
5.47 0.9120
AT1G06710 Tetratricopeptide repeat (TPR)... Potri.007G123600
[exp]
5.74 0.9103
AT4G21065 Tetratricopeptide repeat (TPR)... Potri.006G252400
[exp]
7.28 0.8662
AT3G20440 EMB2729, BE1 EMBRYO DEFECTIVE 2729, BRANCHI... Potri.001G359200
[exp]
7.48 0.9165

Potri.005G063750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.