Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SAL2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63980 530 / 0 SUPO1, RON1, ALX8, HOS2, FRY1, ATSAL1, SAL1 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) AT5G09290 399 / 1e-138 Inositol monophosphatase family protein (.1) AT5G64000 397 / 1e-137 ATSAL2, SAL2 Inositol monophosphatase family protein (.1) AT5G63990 387 / 1e-133 Inositol monophosphatase family protein (.1.2) AT5G54390 251 / 4e-80 ATAHL, AHL HAL2-like (.1) AT4G05090 139 / 2e-37 Inositol monophosphatase family protein (.1) AT4G39120 47 / 1e-05 HISN7, IMPL2 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) AT1G31190 45 / 7e-05 IMPL1 myo-inositol monophosphatase like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105100 [exp] 664 / 0 AT5G63980 535 / 0.0 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Potri.011G124700 [exp] 260 / 1e-83 AT5G54390 489 / 4e-174 HAL2-like (.1) Potri.004G036400 [exp] 262 / 3e-83 AT5G54390 497 / 7e-176 HAL2-like (.1) Potri.011G044900 [exp] 261 / 3e-83 AT5G54390 502 / 2e-177 HAL2-like (.1) Potri.004G033200 [exp] 142 / 3e-38 AT4G05090 522 / 0.0 Inositol monophosphatase family protein (.1) Potri.009G120600 [exp] 45 / 4e-05 AT4G39120 466 / 2e-165 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1) Potri.010G156500 [exp] 45 / 4e-05 AT3G02870 421 / 7e-151 Inositol monophosphatase family protein (.1.2.3) Potri.015G120400 [exp] 44 / 0.0002 AT1G31190 540 / 0.0 myo-inositol monophosphatase like 1 (.1) Potri.012G120492 [exp] 43 / 0.0002 AT1G31190 551 / 0.0 myo-inositol monophosphatase like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015663 [exp] 424 / 1e-147 AT5G63980 454 / 2e-159 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10037677 [exp] 402 / 1e-140 AT5G63980 420 / 9e-148 suppressors of PIN1 overexpression 1, ROTUNDA 1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 2, FIERY1, ALTERED EXPRESSION OF APX2 8, Inositol monophosphatase family protein (.1) Lus10038597 [exp] 258 / 1e-82 AT5G54390 505 / 2e-180 HAL2-like (.1) Lus10037888 [exp] 254 / 4e-81 AT5G54390 497 / 6e-177 HAL2-like (.1) Lus10018453 [exp] 236 / 1e-73 AT5G54390 442 / 2e-154 HAL2-like (.1) Lus10011231 [exp] 230 / 5e-71 AT5G54390 447 / 4e-156 HAL2-like (.1) Lus10006739 [exp] 143 / 1e-38 AT4G05090 469 / 8e-166 Inositol monophosphatase family protein (.1) Lus10007817 [exp] 130 / 9e-34 AT4G05090 436 / 4e-152 Inositol monophosphatase family protein (.1) Lus10018305 [exp] 46 / 4e-05 AT1G31190 573 / 0.0 myo-inositol monophosphatase like 1 (.1) Lus10017976 [exp] 43 / 0.0003 AT4G39120 429 / 9e-151 HISTIDINE BIOSYNTHESIS 7, myo-inositol monophosphatase like 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0171 [poplar] [flax] Phospoesterase PF00459 [poplar] [flax] Inositol_P Inositol monophosphatase family
Representative CDS sequence Show only first row Show all	>Potri.005G063900.1 pacid=42804161 polypeptide=Potri.005G063900.1.p locus=Potri.005G063900 ID=Potri.005G063900.1.v4.1 annot-version=v4.1 ATGTCCATAAATTTTGTAAGCATTATTGCAAAACCCAAAATCACAATCACAACAAACCCTTTTCTTGTTTCCTCTCCTCTCCTCTTTTTCTCTAACAAAA CCAAAACGAAACCCTCTATTCTAACAGCATTTTCTTCGATGTCTTACGATAAAGAACTTGCTGCTGCCAAGAAAGCTGCCTCTCTCGCTGCCCGACTCTG CCAGAAGGTGCAAAAAGCTATTTTGCAATCGGATGTCCAATCAAAATCAGATAAAAGTCCCGTCACAGTTGCTGATTATGGCTCTCAAGCACTAGTTAGT TATGTTCTGCAGAGGGAGCTTCCTTCTGAACTATTTTCATTAGTGGCTGAGGAGGATTCGGAAGATCTCCGCAAGGATGGTGCCCAGGAAACTCAAGAGC GCATTACAAAACTTGTTAATGATATTCTAGCTAGTGATGGATCATATAGTGATTCTATTTTATCCACGGATGATGTTGTCAAGGCCATTGACTGTGGCAA ATCTGAAGGTGGTTCACGAGGCAGACACTGGGTTCTGGATCCTATAGATGGTACTAAAGGGTTCTTAAGAGGAGATCAATATGCAATAGCTTTAGCATTG CTAGATGAAGGGACAGTAGTGTTGGGTGTCTTGGCTTGTCCCAATCTTCCAATAACTTCCATTGCTGGTGGTGGCTCTCACCATTCTTTGCCTGGTGAAG TTGGTTGCCTTTTCTTCTCTGTAGCTGGTGGTGGTACTTACATGCATTCACTGGATAGCTCTTCAGCAGTGAAGGTGCAAGTCAGCTCTATTGACAATCC TGAAGAAGCTTCATTCTTTGAATCATATGAAGCAGCACACTCCATGCATGATCTATCCAGTTCTATTGCCAAAAAACTTGGTGTCAAAGCACCACCAGTT AGAATTGATAGCCAAGCAAAGTATGGCGCTCTGTCCAGAGGAGATGGGGTCATTTATCTGCGATTCCCACATAAAGGTTACCGTGAAAAAATATGGGATC ATGCTGCTGGATACATAGTGGTCGCAGAAGCTGGGGGGGTGGTCACTGATGCTGCAGGGAACCCCTTAGATTTTTCAAAAGGAAGATACCTGGATCTTGA CACTGGCATCATTGTTACTAATCAGAAGTTGATGCCATCACTTTTAAAGGCTGTTAGAGAATCCATTGAGGAGAAAATTTCATCGTTGTGA
AA sequence Show only first row Show all	>Potri.005G063900.1 pacid=42804161 polypeptide=Potri.005G063900.1.p locus=Potri.005G063900 ID=Potri.005G063900.1.v4.1 annot-version=v4.1 MSINFVSIIAKPKITITTNPFLVSSPLLFFSNKTKTKPSILTAFSSMSYDKELAAAKKAASLAARLCQKVQKAILQSDVQSKSDKSPVTVADYGSQALVS YVLQRELPSELFSLVAEEDSEDLRKDGAQETQERITKLVNDILASDGSYSDSILSTDDVVKAIDCGKSEGGSRGRHWVLDPIDGTKGFLRGDQYAIALAL LDEGTVVLGVLACPNLPITSIAGGGSHHSLPGEVGCLFFSVAGGGTYMHSLDSSSAVKVQVSSIDNPEEASFFESYEAAHSMHDLSSSIAKKLGVKAPPV RIDSQAKYGALSRGDGVIYLRFPHKGYREKIWDHAAGYIVVAEAGGVVTDAAGNPLDFSKGRYLDLDTGIIVTNQKLMPSLLKAVRESIEEKISSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.005G063900 [exp]	0	1	Pt-SAL2.1
AT3G43660			Vacuolar iron transporter (VIT...		Potri.001G456000 [exp]	3.16	0.8006
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Potri.001G354000 [exp]	4.24	0.7898
AT3G58730			vacuolar ATP synthase subunit ...		Potri.001G331800 [exp]	6.92	0.7676
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.008G100800 [exp]	10.39	0.7883	LPD1,Pt-LPD.1
AT1G04640		LIP2	lipoyltransferase 2 (.1.2)		Potri.001G014000 [exp]	14.07	0.8046	LIP2.2
AT2G45290			Transketolase (.1)		Potri.014G068200 [exp]	16.58	0.7416
AT5G64050		ATERS, ERS, OVA...	OVULE ABORTION 3, glutamate tR...		Potri.009G169700 [exp]	21.97	0.7890
AT5G42960			unknown protein		Potri.014G181000 [exp]	24.73	0.7513
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.010G237400 [exp]	25.25	0.7625	NFU4.2
AT1G05430			unknown protein		Potri.010G086300 [exp]	28.42	0.7078

Compare expression of checked genes

Potri.005G063900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.