Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrWBC5-1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13610 900 / 0 ABCG5 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) AT1G53270 493 / 9e-168 ABCG10 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) AT4G25750 439 / 7e-147 ABCG4 ATP-binding cassette G4, ABC-2 type transporter family protein (.1) AT5G19410 440 / 9e-147 ABCG23 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) AT5G52860 438 / 2e-146 ABCG8 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) AT3G55110 347 / 9e-110 ABCG18 ATP-binding cassette G18, ABC-2 type transporter family protein (.1) AT3G55090 336 / 2e-105 ABCG16 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) AT2G39350 327 / 5e-102 ABCG1 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) AT3G55130 327 / 6e-102 ABCG19, ATWBC19 ATP-binding cassette G19, white-brown complex homolog 19 (.1) AT3G55100 323 / 3e-101 ABCG17 ATP-binding cassette G17, ABC-2 type transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104801 [exp] 1168 / 0 AT2G13610 949 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Potri.011G112100 [exp] 558 / 0 AT1G53270 753 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.001G393300 [exp] 553 / 0 AT1G53270 756 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.013G117700 [exp] 530 / 0 AT1G53270 666 / 0.0 ATP-binding cassette G10, ABC-2 type transporter family protein (.1) Potri.009G070100 [exp] 464 / 7e-156 AT5G19410 707 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Potri.015G027600 [exp] 438 / 3e-146 AT5G52860 733 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Potri.010G213400 [exp] 344 / 4e-108 AT3G55090 1014 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.008G047900 [exp] 339 / 2e-106 AT3G55090 1008 / 0.0 ATP-binding cassette G16, ABC-2 type transporter family protein (.1) Potri.014G080200 [exp] 334 / 2e-104 AT2G37360 955 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029905 [exp] 699 / 0 AT2G13610 743 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10004496 [exp] 682 / 0 AT2G13610 729 / 0.0 ATP-binding cassette G5, ABC-2 type transporter family protein (.1) Lus10017683 [exp] 453 / 1e-151 AT5G19410 731 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10000737 [exp] 447 / 3e-149 AT5G19410 754 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10033637 [exp] 448 / 1e-148 AT5G19410 735 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10027545 [exp] 442 / 2e-147 AT5G52860 781 / 0.0 ATP-binding cassette G8, ABC-2 type transporter family protein (.1) Lus10008500 [exp] 425 / 1e-140 AT5G19410 758 / 0.0 ATP-binding cassette G23, ABC-2 type transporter family protein (.1) Lus10023465 [exp] 335 / 2e-104 AT2G39350 1064 / 0.0 ATP-binding cassette G1, ABC-2 type transporter family protein (.1) Lus10025281 [exp] 311 / 1e-95 AT2G37360 1035 / 0.0 ATP-binding cassette G2, ABC-2 type transporter family protein (.1) Lus10039304 [exp] 267 / 3e-83 AT5G52860 504 / 8e-177 ATP-binding cassette G8, ABC-2 type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.005G064300.1 pacid=42805595 polypeptide=Potri.005G064300.1.p locus=Potri.005G064300 ID=Potri.005G064300.1.v4.1 annot-version=v4.1 ATGCCAATAAACTGGTTGAATCTTGAGAAACCAAACCAAAAATTTGAGCAAAAAATAGCAATGAAGAAGCAAGGTTGTGAGATTGAAGCAATAGGGATTT CCTACAAAATCTCAACCAAGAAAAGAGAGCACCCTTTTAAAATCTTCACCAAAAAGCAAGAAATAAATGAAGAACCAAAGCAAGTGACGGATCTCGAAGA AGCAAGCCTTGGAGCCAAGCATGTCTTGAAAGATGTTTTTTGCAAAGCAAAGCCATGGGAAATCCTTGCCATTGTTGGTCCAAGTGGAGCTGGAAAATCA TCCTTGCTTGAAATCCTAGCTGGGAAACTCACCCCACAAAATGGTACCATTTTTGTCAACCAAAACCCTATTGACAAAGCTCGGTTCAAGAAGATTTCAG GCTATGTCACACAAAAAGACACCCTCTTTCCTCTCCTTACAGTCGAAGAAACACTCATGTTTAGTGCCAAACTGCGTCTAAGGCTTCCTCAAGCTCAACT GAGCTCTAATGTTAAGTCCCTGATGAAGGAGTTAGGCCTGGATCACGTAGCCATGACTCGAGTTGGCGACGACAGGATTCGTGGGATATCAGGCGGAGAA AGGCGTCGTGTGTCGATAGGAGTTGATGCCATTCATGATCCTGAAGTGCTAATTCTTGATGAACCAACTTCTGGTCTTGATAGCACTTCTGCTTTACAAA TTATTGATATGCTCAAGGTCATGGCGGAGACAAGAGGTCGAACCATAATACTAAGCATTCATCAACCCGGATTTCGGATTGTGAAGTTGTTCAACTCAAT ACTTATGATGGCTAATGGATCAGTCTTGCATCATGGCACGGTGGATCAGCTTGGTGTTAATTTGAGGACAATGGGAATGCAGCTTCCTATTCATGTCAAT GTTGTTGAATTTGCCATTGAGTCCATTGAAACCATTCAACAGCAAAGAGAAGTCTTGCAGAAAGAAATGCAACCCCAAGTGCTAACATCATCAACAACAA AACCACAGCAGAAGAAAATAGAAGAAGTTGGCGAGGGTAGAAGTGGCAAGTTCACTCTTCAACAGCTCTTTCAGCAATCGAAAGTAGTTGATGAGGAAAT TATCAATGTTGAGTTTGATTTTCCTCTTGGTTTTGCTAATTCAAGGTTGCAAGAAACTTTGATCCTCACTCATAGGTTCTCCAAGAACATTTTCAGAACC AAGGAGCTTTTCGCATGCCGGACAATTCAAATGCTGATTTCTGGACTTGTTTTGGGCTCTATCTTCTACAACCTTGAAGATGATTTGATTGGAGCAGAAG AAAGGGTAGGCCTATTTGCTTTTATATTGACTTTCTTGTTATCTTGCACAACAGAAGCTCTACCAATCTTCTTGCAAGAAAGGGAGATTCTTATGAAGGA GACATCTTGTGGGAGCTATAGAGTCTCATCATACGCCATAGCCAATGGACTCGTTTACTTGCCATTTCTACTCATCCTAGCCATATTATTCACAATTCCA CTATATTGGCTAGTGGGGCTCAATCCAAATTTCATTGCATTCATGCATTTCCTGTTGTTGATTTGGTTGATTCTCTACACAGCGAATTCAGTTGTGGTGT GTTTCAGTGCTCTAGTGCCTAACTTCATCGTTGGAAATTCAGTTATTTCAGGGGTGATGGGATCATTCTTCTTGTTCTCCGGCTACTTCACATCGAAGCA TGGAATACCAAATTATTGGATCTTCATGCACTATATATCGCTGTTTAAGTATCCATTTGAAGGGTTTCTGATAAATGAGTTCTCAAATTCAGGCAAATGC TTGGAATACATGTTTGGGAAATGCATGGTTAATGCAGAAGATTTGCTTAGAGAAGAAGGATATAGAGAGGATGAAAAGTGGAGAAATGTGGTGATCATGG TGTGTTTCATCTTGCTTTACAGGTTCATTTCTTATGTCATTCTTAGGTTTAGATGCTGTCCTGGCATCAGCAGGTTCAAGGGAACACTTGTCTGA
AA sequence Show only first row Show all	>Potri.005G064300.1 pacid=42805595 polypeptide=Potri.005G064300.1.p locus=Potri.005G064300 ID=Potri.005G064300.1.v4.1 annot-version=v4.1 MPINWLNLEKPNQKFEQKIAMKKQGCEIEAIGISYKISTKKREHPFKIFTKKQEINEEPKQVTDLEEASLGAKHVLKDVFCKAKPWEILAIVGPSGAGKS SLLEILAGKLTPQNGTIFVNQNPIDKARFKKISGYVTQKDTLFPLLTVEETLMFSAKLRLRLPQAQLSSNVKSLMKELGLDHVAMTRVGDDRIRGISGGE RRRVSIGVDAIHDPEVLILDEPTSGLDSTSALQIIDMLKVMAETRGRTIILSIHQPGFRIVKLFNSILMMANGSVLHHGTVDQLGVNLRTMGMQLPIHVN VVEFAIESIETIQQQREVLQKEMQPQVLTSSTTKPQQKKIEEVGEGRSGKFTLQQLFQQSKVVDEEIINVEFDFPLGFANSRLQETLILTHRFSKNIFRT KELFACRTIQMLISGLVLGSIFYNLEDDLIGAEERVGLFAFILTFLLSCTTEALPIFLQEREILMKETSCGSYRVSSYAIANGLVYLPFLLILAILFTIP LYWLVGLNPNFIAFMHFLLLIWLILYTANSVVVCFSALVPNFIVGNSVISGVMGSFFLFSGYFTSKHGIPNYWIFMHYISLFKYPFEGFLINEFSNSGKC LEYMFGKCMVNAEDLLREEGYREDEKWRNVVIMVCFILLYRFISYVILRFRCCPGISRFKGTLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.005G064300 [exp]	0	1	PtrWBC5-1
AT5G19730			Pectin lyase-like superfamily ...		Potri.018G068400 [exp]	1.41	0.8526
AT1G79720			Eukaryotic aspartyl protease f...		Potri.001G041700 [exp]	2.00	0.8378
AT3G17130			Plant invertase/pectin methyle...		Potri.008G102600 [exp]	2.44	0.8157
AT1G79720			Eukaryotic aspartyl protease f...		Potri.003G185175 [exp]	2.82	0.7991
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	3.16	0.7958
AT4G25780			CAP (Cysteine-rich secretory p...		Potri.018G096028 [exp]	4.89	0.7744
AT4G37820			unknown protein		Potri.002G112800 [exp]	6.32	0.7321
					Potri.014G137550 [exp]	9.84	0.5905
AT1G48100			Pectin lyase-like superfamily ...		Potri.008G100500 [exp]	14.96	0.6609
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.009G123900 [exp]	16.58	0.6649

Compare expression of checked genes

Potri.005G064300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.