Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76980 70 / 8e-14 unknown protein AT1G21390 65 / 3e-12 EMB2170 embryo defective 2170 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104500 [exp] 297 / 4e-101 AT1G76980 70 / 6e-14 unknown protein Potri.002G075400 [exp] 69 / 2e-13 AT1G76980 141 / 2e-40 unknown protein Potri.005G185200 [exp] 67 / 2e-12 AT1G76980 134 / 1e-37 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019210 [exp] 64 / 7e-12 AT1G21390 46 / 7e-06 embryo defective 2170 (.1) Lus10004311 [exp] 60 / 3e-10 AT1G21390 47 / 3e-06 embryo defective 2170 (.1) Lus10018947 [exp] 52 / 2e-07 AT1G21390 64 / 8e-12 embryo defective 2170 (.1) Lus10000771 [exp] 49 / 1e-06 AT1G21390 66 / 1e-12 embryo defective 2170 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G064700.1 pacid=42802696 polypeptide=Potri.005G064700.1.p locus=Potri.005G064700 ID=Potri.005G064700.1.v4.1 annot-version=v4.1 ATGCACACCAGTTTTGATGGGAAGGTAGATGTAGAGTTTGATTTCTGGGGTGCAAGTGAAACCCAATATTACAGTAATGATAGAGGTGCTAGTGAAGTAG AGTTTCAAGCGCAGGTTGAAGAAGACTTTGCTGATTACTCACTACCCTTATGGAAAACAGATATGTCAAGAAACGTTAGAAATGAATCCTCTCCCTTACT TCCCCGTGGCCATCATTACAGTAATATTTCGCCGAGGTCTCGGCTAAAAGTGATGGCAGAAGGTAGGAGGAAGCTCATGGAGATTGTTCATAGCATGCCA GAATCTAGTTATGAACTGTCTTTAAAGGATATTGTTGATGAGCAGCAGATTTCTGAAGGGGCACAGGACGAGATGCCGAAGCAAAGGACGACTTCTGATT TCAAGTCTGAGGCTCAAATCATCAAGAAACAGAAGACGAAGAAAACAAAGAGTTTCAGTAAGTCGGGTAATATTTCAAGAAGTAGAAGCATGGAAAAGGA AAATTTCTTGATCAAGATGTTCATTCCAACTTCTCTCAGTTTCAAGATCAGAGACAACACAAGAAATGGCTCAAAAGTTCTTCCAAGGTCATCGATGGAA CTAACTGATAACCGTGAAGATAAGAAGTGGTGGATCAAAGGGATTTTGTTTAAAGGAGAATGTAAGAACAGTGGAAAGAGCAGCAGCACAAGAACTAGTA GCAGCAATAGCAGCACACGCACTAGTAGCAGCAATAGCAGGTATGACAATATGGAGGCCTTGCCAAGTTGCTGGCCTTTTTTCCGCACTAAGAAAAGCAG GAGGACAAGACTCGAAGGACACATCTTCTAA
AA sequence Show only first row Show all	>Potri.005G064700.1 pacid=42802696 polypeptide=Potri.005G064700.1.p locus=Potri.005G064700 ID=Potri.005G064700.1.v4.1 annot-version=v4.1 MHTSFDGKVDVEFDFWGASETQYYSNDRGASEVEFQAQVEEDFADYSLPLWKTDMSRNVRNESSPLLPRGHHYSNISPRSRLKVMAEGRRKLMEIVHSMP ESSYELSLKDIVDEQQISEGAQDEMPKQRTTSDFKSEAQIIKKQKTKKTKSFSKSGNISRSRSMEKENFLIKMFIPTSLSFKIRDNTRNGSKVLPRSSME LTDNREDKKWWIKGILFKGECKNSGKSSSTRTSSSNSSTRTSSSNSRYDNMEALPSCWPFFRTKKSRRTRLEGHIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76980			unknown protein		Potri.005G064700 [exp]	0	1
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039300 [exp]	2.82	0.9593
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117927 [exp]	4.00	0.9602
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G011600 [exp]	10.77	0.9524
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G117981 [exp]	13.19	0.9101
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028600 [exp]	13.19	0.9471
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.012G090500 [exp]	16.12	0.9480
AT1G11330			S-locus lectin protein kinase ...		Potri.011G039400 [exp]	17.86	0.9421
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G065300 [exp]	19.44	0.9254
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.011G054500 [exp]	19.59	0.9452
AT3G05660		AtRLP33	receptor like protein 33 (.1)		Potri.012G020600 [exp]	21.35	0.9339

Compare expression of checked genes

Potri.005G064700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.