Plant FIBer expression Database

Potri.005G065026 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G065026.1 pacid=42803864 polypeptide=Potri.005G065026.1.p locus=Potri.005G065026 ID=Potri.005G065026.1.v4.1 annot-version=v4.1
ATGCAGATTAAGGACTTCATTCCTAGCCACGAAGACAGTACTAACCAAACCAACTTTAACAGAACTTTTTGGATTTTCCCTAATTCCCTCTATACTTCAA
TTTTGTTTGCATTTGGTAAACTGAGAAAGGAGAACAGGAAGCTTGGGGCTTCGTCAATGGCTTTAGGATCCACTAAGCAAGGATTAGTCCAAAAAGAAGG
CAGCAGCCGGAAGTTGCTCCCACCAATTAGAGGAAAAATCAAGCGCCAAATTTTGGCTTGTTTCATGAAGAAGATGGAAGTAATGAGACAAAAAACCATA
TTATTTCTTCTCTGCTGCTCTGGTGAGACCTCCTAG
AA sequence
>Potri.005G065026.1 pacid=42803864 polypeptide=Potri.005G065026.1.p locus=Potri.005G065026 ID=Potri.005G065026.1.v4.1 annot-version=v4.1
MQIKDFIPSHEDSTNQTNFNRTFWIFPNSLYTSILFAFGKLRKENRKLGASSMALGSTKQGLVQKEGSSRKLLPPIRGKIKRQILACFMKKMEVMRQKTI
LFLLCCSGETS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G065026
[exp]
0 1
AT2G44940 AP2_ERF Integrase-type DNA-binding sup... Potri.002G141200
[exp]
9.79 0.8630
AT4G29110 unknown protein Potri.018G086500
[exp]
31.14 0.8364
AT5G38610 Plant invertase/pectin methyle... Potri.003G086600
[exp]
37.38 0.8542
AT1G01250 AP2_ERF Integrase-type DNA-binding sup... Potri.002G172200
[exp]
37.41 0.8325
AT3G06840 unknown protein Potri.008G219500
[exp]
40.65 0.8269
AT2G26640 KCS11 3-ketoacyl-CoA synthase 11 (.1... Potri.010G080200
[exp]
46.47 0.8374
AT2G44050 COS1 coronatine insensitive1 suppre... Potri.007G146000
[exp]
63.98 0.8137
AT5G52540 Protein of unknown function (D... Potri.004G079300
[exp]
72.88 0.8074
AT5G55630 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE... Potri.008G004700
[exp]
75.21 0.8060
AT1G45688 unknown protein Potri.003G052900
[exp]
78.23 0.8051

Potri.005G065026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.