Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64020 533 / 0 TBL14 TRICHOME BIREFRINGENCE-LIKE 14 (.1) AT5G20680 530 / 0 TBL16 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) AT2G37720 458 / 1e-157 TBL15 TRICHOME BIREFRINGENCE-LIKE 15 (.1) AT3G06080 187 / 3e-53 TBL10 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) AT5G06230 184 / 3e-53 TBL9 TRICHOME BIREFRINGENCE-LIKE 9 (.1.2) AT5G19160 174 / 2e-48 TBL11 TRICHOME BIREFRINGENCE-LIKE 11 (.1) AT3G62390 173 / 5e-48 TBL6 TRICHOME BIREFRINGENCE-LIKE 6 (.1) AT3G11570 167 / 3e-46 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 (.1) AT1G01430 166 / 9e-46 TBL25 TRICHOME BIREFRINGENCE-LIKE 25 (.1) AT5G20590 167 / 1e-45 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104300 [exp] 766 / 0 AT5G20680 524 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.005G064875 [exp] 657 / 0 AT5G64020 478 / 4e-170 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Potri.006G140300 [exp] 538 / 0 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Potri.002G195800 [exp] 180 / 5e-50 AT3G62390 593 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Potri.008G203900 [exp] 178 / 5e-50 AT5G19160 652 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Potri.006G071500 [exp] 174 / 3e-48 AT5G20590 633 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.018G133000 [exp] 172 / 2e-47 AT5G20590 606 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Potri.016G074800 [exp] 169 / 3e-47 AT3G11570 506 / 2e-179 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Potri.009G072800 [exp] 164 / 2e-45 AT5G58600 523 / 0.0 TRICHOME BIREFRINGENCE-LIKE 44, POWDERY MILDEW RESISTANT 5, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038577 [exp] 579 / 0 AT5G64020 502 / 1e-177 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10039914 [exp] 487 / 3e-169 AT5G20680 597 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10027651 [exp] 480 / 2e-166 AT5G20680 595 / 0.0 TRICHOME BIREFRINGENCE-LIKE 16 (.1.2.3) Lus10037877 [exp] 461 / 6e-162 AT5G64020 404 / 1e-141 TRICHOME BIREFRINGENCE-LIKE 14 (.1) Lus10002430 [exp] 189 / 1e-53 AT3G62390 531 / 0.0 TRICHOME BIREFRINGENCE-LIKE 6 (.1) Lus10034039 [exp] 188 / 1e-53 AT3G06080 553 / 0.0 TRICHOME BIREFRINGENCE-LIKE 10, Plant protein of unknown function (DUF828) (.1), Plant protein of unknown function (DUF828) (.2) Lus10004225 [exp] 180 / 4e-51 AT3G11570 518 / 0.0 TRICHOME BIREFRINGENCE-LIKE 8 (.1) Lus10034041 [exp] 176 / 4e-49 AT5G19160 605 / 0.0 TRICHOME BIREFRINGENCE-LIKE 11 (.1) Lus10011932 [exp] 176 / 5e-49 AT5G20590 543 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1) Lus10027637 [exp] 176 / 6e-49 AT5G20590 540 / 0.0 TRICHOME BIREFRINGENCE-LIKE 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF13839 [poplar] [flax] PC-Esterase GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p CL0264 [poplar] [flax] PF14416 [poplar] [flax] PMR5N PMR5 N terminal Domain
Representative CDS sequence Show only first row Show all	>Potri.005G065100.5 pacid=42805395 polypeptide=Potri.005G065100.5.p locus=Potri.005G065100 ID=Potri.005G065100.5.v4.1 annot-version=v4.1 ATGAAAGGAAACTTTTGTAGATTGAAGGGGAGGCACCTTTCTGTTACTCTGCTTGTCCTTACTTTTACAACCATATTTCTCTGGGCGTGGGAAAAGAATC CTTTTGTTACTACTTTGCGGTCAGCGCAAGAGCAGTTCAATTTTCATACTTCAGAGTTTGTTGTTGATACTCCCAAAGGCTCTTCTTTTGATTCTTTGAC CCCAAATGAGCATGTTCAGGGAAGAGATTCTAATCCTACAAGATCAGAAGAATCTCAAATACCAGAAAAAGAATTTGACGCCTCAAATTTTACCAACTCA GTTGTTCCTGAAACGGAGGATGGTGATGCAGATAGGAAACCATCTTCTAAGATAAAAGAGTTTGTTGTTGATACTCCCAAAGGCTCTTCTTTTGATTCTT TGATCCCAAATGAGCATGTTCAGGAAACAGATTCTGATCCTACAAGATTAGAAGAATCTATAATACCAGAAAAAGAATTTGATGCCTCAAATTTTACCAG CTCAGTTGTTTCTCAAACAGAGGATGGTGATGCAGATAGGAAATCGTCTTCTAAGATAAAAGACTGCAATTATTCCAAGGGTAGATGGGTTGCAGATAGC AGGCGGCCTTTGTATTCTGGTTTTGAATGTAAACAATGGTTATCTGAAATGTGGGCATGTAGACTAACCCAACGGACAGATTTTTCCTTCGAGGGATATC GATGGCAACCAGAAAACTGCAAAATGCTGGAGTTTGAGAAATCTGCATTCTTGAGAAGGATGCAGGACAGAACAATTGCATTCATAGGAGATTCACTGGG CAGGCAACAATTCCAGTCTTTGATGTGCATGGCATCTGGTGGGGAACGGAGGGAAGATATTGAAAATGTGGGAAAAGAATATGGTCTTGTTAAAGCTCGT GGAGCCATTCGTCCTGATGGCTGGGCTTATCGGTTTTCAAACACCAATACCACCATTTTGTATTACTGGTCAGCAAGCCTTGCTGACTTAGAGCCTTTGA ACATCACTGACAAAGCCACTGATGTTGCTATGCATCTGGACCGTGCACCAGCCTTCATGAGACGATTCCTCCATCGGTTTGATGTGTTAGTTCTTAATAC AGGACATCATTGGAACAGAGGGAAGATAACAGCAAACCGTTGGGTGATGTATGTCAATGGGAAGCCCCTTAAAGATAGAAAACTCTTGGAAATTGGGAAT GCCAAGAATTTTACAGTGCATAGTGTTGCCAGGTGGGTTGATTCTCAACTTCCTTCTCATCCCCGACTTAAGGCTTTCTTCAGGACCATCTCACCAAGGC ATTTTCGTAATGGGGACTGGAACACTGGAGGTAATTGTGATAATACCACTCCTTTGACTGGAGGGAGCGAAATCTCACAGGATGAATCGAGTGATCCAGT TATTGCGGCTGCTGTTAAAGGAACAAATATCACGCTTTTGGATATCACTGCTCTCTCTGAGCTAAGAGATGAAGGTCACATCTCAAGGTACAGTGTTAAG GCAACAACGGGAGTAAATGACTGCTTGCATTGGTGCCTTCCTGGCATTCCAGACACATGGAATGAACTTCTTATTGCACAGGTATAG
AA sequence Show only first row Show all	>Potri.005G065100.5 pacid=42805395 polypeptide=Potri.005G065100.5.p locus=Potri.005G065100 ID=Potri.005G065100.5.v4.1 annot-version=v4.1 MKGNFCRLKGRHLSVTLLVLTFTTIFLWAWEKNPFVTTLRSAQEQFNFHTSEFVVDTPKGSSFDSLTPNEHVQGRDSNPTRSEESQIPEKEFDASNFTNS VVPETEDGDADRKPSSKIKEFVVDTPKGSSFDSLIPNEHVQETDSDPTRLEESIIPEKEFDASNFTSSVVSQTEDGDADRKSSSKIKDCNYSKGRWVADS RRPLYSGFECKQWLSEMWACRLTQRTDFSFEGYRWQPENCKMLEFEKSAFLRRMQDRTIAFIGDSLGRQQFQSLMCMASGGERREDIENVGKEYGLVKAR GAIRPDGWAYRFSNTNTTILYYWSASLADLEPLNITDKATDVAMHLDRAPAFMRRFLHRFDVLVLNTGHHWNRGKITANRWVMYVNGKPLKDRKLLEIGN AKNFTVHSVARWVDSQLPSHPRLKAFFRTISPRHFRNGDWNTGGNCDNTTPLTGGSEISQDESSDPVIAAAVKGTNITLLDITALSELRDEGHISRYSVK ATTGVNDCLHWCLPGIPDTWNELLIAQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Potri.005G065100 [exp]	0	1
AT5G64020		TBL14	TRICHOME BIREFRINGENCE-LIKE 14...		Potri.005G064875 [exp]	1.00	0.9238
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Potri.006G114300 [exp]	16.88	0.8171
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Potri.012G111600 [exp]	28.56	0.7647	RHD2.1
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.002G246500 [exp]	33.64	0.8193
AT4G25360		TBL18	TRICHOME BIREFRINGENCE-LIKE 18...		Potri.012G129700 [exp]	40.98	0.7951	YLS7.2
					Potri.014G162800 [exp]	41.18	0.7761
AT4G23650		CDPK6, CPK3	Calcium dependent protein kina...		Potri.001G097400 [exp]	43.24	0.7753	CPK3,CDPK5.4
AT5G24710			Transducin/WD40 repeat-like su...		Potri.006G081800 [exp]	61.96	0.7947
AT1G12260	NAC	ANAC007, VND4, ...	VASCULAR RELATED NAC-DOMAIN PR...		Potri.015G127400 [exp]	75.33	0.7583
AT3G06550		RWA2	REDUCED WALL ACETYLATION 2, O-...		Potri.008G102300 [exp]	76.34	0.7865

Compare expression of checked genes

Potri.005G065100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.