Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64030 1078 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G29470 919 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT2G34300 909 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G51070 885 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G40280 586 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G56080 568 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G19430 559 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G06050 484 / 1e-160 Putative methyltransferase family protein (.1) AT1G77260 470 / 1e-155 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G39750 464 / 5e-153 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G104000 [exp] 1178 / 0 AT5G64030 1022 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G184500 [exp] 1058 / 0 AT1G29470 1050 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.002G075800 [exp] 1045 / 0 AT1G29470 1048 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G118100 [exp] 910 / 0 AT3G51070 990 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G017400 [exp] 884 / 0 AT3G51070 960 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.010G185000 [exp] 608 / 0 AT2G40280 810 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G260600 [exp] 565 / 0 AT1G19430 953 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G059500 [exp] 473 / 1e-156 AT2G39750 1040 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G077100 [exp] 468 / 1e-154 AT1G77260 907 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018954 [exp] 979 / 0 AT1G29470 1047 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10020894 [exp] 966 / 0 AT5G64030 1019 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10042767 [exp] 952 / 0 AT1G29470 1056 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10029736 [exp] 952 / 0 AT1G29470 1053 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10028650 [exp] 927 / 0 AT1G29470 1036 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019644 [exp] 922 / 0 AT5G64030 922 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033481 [exp] 879 / 0 AT5G64030 924 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028354 [exp] 857 / 0 AT3G51070 1051 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041804 [exp] 846 / 0 AT3G51070 1034 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014274 [exp] 822 / 0 AT3G51070 1041 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03141 [poplar] [flax] Methyltransf_29 Putative S-adenosyl-L-methionine-dependent methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G065200.1 pacid=42802783 polypeptide=Potri.005G065200.1.p locus=Potri.005G065200 ID=Potri.005G065200.1.v4.1 annot-version=v4.1 ATGGCGTTAGGCAAATATAGTAGGGTAGACAATAGAAGACATAATTCGAGTTACTACTCAACAGTCACGATTGTGGTGTTTGTGGGTCTCTGCTTGGTTG GGGCATGGATGATGACATCGTCATCTGTGGTTCCTGGTCAAAATGTAGACGTTCCTGCTCAGGAAAACAAGAATGAGGTGAAACAACAAGTGACTGAGAG CAATGAAATCAACACTAAGCAATTTGAAGATAACCCAGGTGATTTGCCTGAGGATGCAACAAAAGGTGACAACAGTATGCCCGAAGAGAAGCCCGAGGAG AAGCCAGAGGAGAAGCCCGAAGAGAAGCCAGAGGAGAAGCCAGATGCAACAAAAGGTGACGACAGTGTGCCTGAAGAGAAGCCCGAGGAGAAGCCAGAAG AGAAGCCCGAGGAGAAGCCAGTAGAGAAAACCGACGAAAAATCTAATGAAGAGACAAAGTCGGATGATGGTTCAGATACCGAGACACAAAATGGAGTCAA CAATACAGAAGATGTGGATGCTAAAACCAACGATGGAGAAACAAACACAGAAGATGGAGGGACAAAGGCAGATGATAGTGAAGGTAATGCAGCTGGACAA GGAGATTCCGAGGAGAATTCTACAGAGAAGAAACCTGATACTGATGAGACCGAAACAAAATCCGATGAGAATGCTGGTGAAGATAAGGATAGGGAAACAG GGAATGATCAGCTAGATGAGAAGGTGGATCAGAAAGATGATAAGGACTCCGATAAAAGTTCTGATGGGCAGGCCAACAACCAGAGTTCAGGCGAGCTACT TCCTTCAGGGGCTCAGTCAGAGCTTTCGAATGAGACCTCCACTCAGAGTGGGTCGTGGTCAACTCAGGCGGCAGAGTCAAAGAATGAGAAGGAAACTCAA CAGTCTTCTAACCAGCAAAAGGGGTACAATTGGAAACTGTGCAATGTCACTGCTGGGCCTGATTTCATCCCATGTCTTGACAATTTGCAAGCAATCAGGA GTCTTCAATCTACAAAGCACTATGAACATCGAGAGAGGCACTGTCCTGAAGAACCTCCAACCTGTCTTGTTCTGCTTCCTGAAGGATATAAACGGCCAAT TGAGTGGCCTACAAGCAGGGAAAAGATATGGTACCACAATGTTCCCCACACCCAGCTTGCACAATATAAGGGGCATCAAAACTGGGTGAAAGTTACAGGT GAATTCCTCACTTTCCCTGGTGGTGGAACCCAGTTTCAGCATGGGGCTCTCCATTACATCGACTTCTTAAATGAGTCTGTGCCTGGCATTGCATGGGGAA AACGAACCCGTGTGATTTTGGATGTTGGATGTGGAGTTGCTAGCTTTGGAGGATATCTTTTCGACAGAGATGTCCTAGCAATGTCATTTGCCCCTAAAGA TGAGCATGAAGCTCAAATACAATTTGCTCTTGAAAGAGGAATCCCAGCTATATCTGCCGTGATGGGAACAAAGAGGCTTCCCTACCCAGGCAGAGTTTTT GATGCTGTCCATTGTGCACGCTGTAGAGTACCTTGGCATATTGAAGGTGGTAAACTTCTTCTGGAGCTGAATCGTGTGTTGCGACCTGGTGGTTTCTTTG TGTGGTCAGCCACTCCTGTTTATCAGAAACTAGCTGAAGATGTTGAAATTTGGCAAGCCATGACTGAACTAACAAAAGCTATGTGCTGGGAACTTGTGTC TATTAACAAGGATACACTTAATGGAGTTGGTGTAGCTACGTACAGGAAGCCTACTTCCAATGACTGCTATGAGAAAAGATCAAAACAAGAGCCTCCACTT TGTGAAGCATCTGATGATCCTAATGCAGCCTGGAATGTGCCATTGCAAGCATGTATGCATAAGGTGCCTGTAGGTTCACTGGAACGTGGGTCTCAATGGC CAGAGCAATGGCCCGCAAGGTTGGATAAAACACCTTATTGGATGTTGAGTTCCCAAGTAGGAGTTTATGGTAAACCCGCACCAGAAGATTTCACTGCAGA TTATGAGCACTGGAAGCGGGTGGTCTCCAATTCATATCTAAATGGAATTGGATTAAACTGGTCATCTGTGAGAAATGCCATGGACATGAGATCTGTTTAT GGAGGTTTTGCTGCAGCTCTGAAGGAGTTGAATGTGTGGGTCATGAATGTGGTCACAGCAGATTCACCAGATACTCTACCTATAATTTATGAACGTGGGC TTTTTGGAATTTATCATGATTGGTGTGAATCATTTAACACTTATCCAAGATCTTATGATCTTCTCCATGCAGACCATCTCTTCTCCAAGGTTAAAAAGAG GTGCAATCTGGCGGCTGTATTTGCTGAAGTTGATAGAATTCTTAGGCCAGAAGGGAAGCTCATTGTCCGGGACAAGGTGGAGATCATTAACGAGCTGGAG AACATGGCAAGGTCTATGCAGTGGGAGGTTAGGATGACCTACTCTAAGGACAAGGAAGGATTGCTGTGTGTTCAGAAATCCATGTGGCGGCCCAAAGAGT CAGAGACGATCAATTATGCTATTGCTTAA
AA sequence Show only first row Show all	>Potri.005G065200.1 pacid=42802783 polypeptide=Potri.005G065200.1.p locus=Potri.005G065200 ID=Potri.005G065200.1.v4.1 annot-version=v4.1 MALGKYSRVDNRRHNSSYYSTVTIVVFVGLCLVGAWMMTSSSVVPGQNVDVPAQENKNEVKQQVTESNEINTKQFEDNPGDLPEDATKGDNSMPEEKPEE KPEEKPEEKPEEKPDATKGDDSVPEEKPEEKPEEKPEEKPVEKTDEKSNEETKSDDGSDTETQNGVNNTEDVDAKTNDGETNTEDGGTKADDSEGNAAGQ GDSEENSTEKKPDTDETETKSDENAGEDKDRETGNDQLDEKVDQKDDKDSDKSSDGQANNQSSGELLPSGAQSELSNETSTQSGSWSTQAAESKNEKETQ QSSNQQKGYNWKLCNVTAGPDFIPCLDNLQAIRSLQSTKHYEHRERHCPEEPPTCLVLLPEGYKRPIEWPTSREKIWYHNVPHTQLAQYKGHQNWVKVTG EFLTFPGGGTQFQHGALHYIDFLNESVPGIAWGKRTRVILDVGCGVASFGGYLFDRDVLAMSFAPKDEHEAQIQFALERGIPAISAVMGTKRLPYPGRVF DAVHCARCRVPWHIEGGKLLLELNRVLRPGGFFVWSATPVYQKLAEDVEIWQAMTELTKAMCWELVSINKDTLNGVGVATYRKPTSNDCYEKRSKQEPPL CEASDDPNAAWNVPLQACMHKVPVGSLERGSQWPEQWPARLDKTPYWMLSSQVGVYGKPAPEDFTADYEHWKRVVSNSYLNGIGLNWSSVRNAMDMRSVY GGFAAALKELNVWVMNVVTADSPDTLPIIYERGLFGIYHDWCESFNTYPRSYDLLHADHLFSKVKKRCNLAAVFAEVDRILRPEGKLIVRDKVEIINELE NMARSMQWEVRMTYSKDKEGLLCVQKSMWRPKESETINYAIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64030			S-adenosyl-L-methionine-depend...		Potri.005G065200 [exp]	0	1
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	1.41	0.9541
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.003G151700 [exp]	3.74	0.9457	POPTRKOR2,KOR1.3
AT5G17420		ATCESA7, MUR10,...	MURUS 10, IRREGULAR XYLEM 3, C...		Potri.006G181900 [exp]	3.87	0.9446	Pt-CESA2.1
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.004G059600 [exp]	5.00	0.9358	CESA.2
AT1G07120			unknown protein		Potri.009G073600 [exp]	6.00	0.9246
AT1G24030			Protein kinase superfamily pro...		Potri.010G095900 [exp]	6.92	0.9423
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.010G244900 [exp]	7.00	0.9348
AT3G61750			Cytochrome b561/ferric reducta...		Potri.014G098700 [exp]	8.83	0.9355
AT5G66420			unknown protein		Potri.007G021000 [exp]	8.83	0.9044
AT5G60720			Protein of unknown function, D...		Potri.009G009500 [exp]	12.00	0.9166

Compare expression of checked genes

Potri.005G065200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.