Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GA20ox2-2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51810 402 / 9e-140 AT2353, GA20OX2, ATGA20OX2 gibberellin 20 oxidase 2 (.1) AT4G25420 396 / 4e-137 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G07200 384 / 3e-132 ATGA20OX3, YAP169 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) AT1G44090 368 / 3e-126 GA2OX5, ATGA20OX5 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 5, gibberellin 20-oxidase 5 (.1) AT1G60980 362 / 5e-124 ATGA20OX4 gibberellin 20-oxidase 4 (.1) AT3G21420 172 / 6e-50 LBO1 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 165 / 1e-47 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT5G05600 161 / 7e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19000 160 / 8e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G11180 161 / 2e-45 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G103800 [exp] 680 / 0 AT5G51810 408 / 6e-142 gibberellin 20 oxidase 2 (.1) Potri.005G184400 [exp] 472 / 3e-167 AT5G51810 380 / 5e-131 gibberellin 20 oxidase 2 (.1) Potri.005G184200 [exp] 469 / 8e-167 AT5G51810 383 / 1e-132 gibberellin 20 oxidase 2 (.1) Potri.015G134600 [exp] 407 / 2e-141 AT5G51810 525 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.002G151300 [exp] 403 / 3e-140 AT4G25420 503 / 1e-179 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.012G132400 [exp] 403 / 9e-140 AT5G51810 522 / 0.0 gibberellin 20 oxidase 2 (.1) Potri.014G073700 [exp] 385 / 5e-133 AT4G25420 481 / 9e-171 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G023600 [exp] 172 / 5e-50 AT3G21420 511 / 0.0 LATERAL BRANCHING OXIDOREDUCTASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.004G146100 [exp] 169 / 1e-48 AT3G19000 374 / 5e-129 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027399 [exp] 404 / 6e-140 AT4G25420 514 / 0.0 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10031671 [exp] 404 / 2e-139 AT5G07200 508 / 1e-180 ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, gibberellin 20-oxidase 3 (.1) Lus10006350 [exp] 382 / 8e-132 AT4G25420 486 / 1e-172 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10036539 [exp] 380 / 7e-131 AT5G51810 464 / 3e-164 gibberellin 20 oxidase 2 (.1) Lus10006722 [exp] 377 / 8e-130 AT1G60980 489 / 5e-174 gibberellin 20-oxidase 4 (.1) Lus10041390 [exp] 376 / 2e-129 AT5G51810 468 / 2e-165 gibberellin 20 oxidase 2 (.1) Lus10015016 [exp] 369 / 1e-126 AT4G25420 494 / 3e-176 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10038894 [exp] 266 / 2e-86 AT5G51810 354 / 7e-121 gibberellin 20 oxidase 2 (.1) Lus10029081 [exp] 169 / 6e-49 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10015252 [exp] 165 / 2e-47 AT1G17020 375 / 1e-129 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G065400.1 pacid=42803370 polypeptide=Potri.005G065400.1.p locus=Potri.005G065400 ID=Potri.005G065400.1.v4.1 annot-version=v4.1 ATGTCTCTCCTAATGGACTCAACCTCTTCAAGTCTTCTCCTGTCTCCTCCTCCATTTCACAGCAAAGATGAAACTGATGCTCCTGTTCTTTACTCATCTT TCTTGCAAAAACAAGCCAACATGCCCACAGAGTTCATTTGGCCCATTGGAGACTTAGTTCACAACCAAGATGAGCTTAAAGAGCCATTGATAGACTTGGA TGGATTCTTGAAAGGTGATGAGCGAGCAACTGCTGATGCGGCTGAGCTTGTTAGGACTGCCTGCTTGAACCACGGCTTCTTTCAAGTCATTAACCATGGA GTTGATATAGGTCTCATTCATGCTGCTCACGAAGAGATTGATAAAATTTTTAAGCTGCCTCTTGACAAGAAACTCAGTACTCGTAGGAAGCCAGGCGATG TGAGTGGATATTCTGGTGCCCATGCACATCGATATTCATCCAAGTTGCCATGGAAGGAGACATTTTCTTTTGGCTACCATGGGGATGATGATTCTGAGCC ACTTGTTGTTGATTACTTCAAATCTGTCTTAGGAGAGAACTTTGAACACACAGGGTGGGTTTACCAAAGATATTGCGAAGCAATGAAGAAAGTATCTCTA GTTATTTTTGAGCTGCTGGGCATTAGCTTGGGAGTTGATCGCTTACACTATCGGAAATTCTTTGAAGATGGAAGCTCAATAATGAGGTGCAACAATTATC CACCTTGCAATAATTCTAGCCTCACTCTTGGCACTGGTCCTCATTGTGACCCAACTTCCTTAACAATACTTCATCAAGACCAAGTTGGTGGTCTTGAAGT CTTTGCAAACAACAAATGGCAAGCAATCCGACCTCGTCCAGATGCCCTAGTTGTAAACATTGGTGATACTTTCACGGCATTATCCAATGGGAGGTACCAG AGCTGCCTTCACAGAGCAGTGGTGAATAGGGAGAGAGAAAGGAAATCATTGGTTTTCTTTGTGAGTCCAAAAGAGGAAAAGGTAGTCAGACCCCCACAAG ATCTTGTTTGCAGAGAAGGGCCGAGGAAGTACCCGGATTTCACTTGGTCAGATTTGTTGGAGTTCACGCAAAAACACTACAGAGCTGATGTCGCTACACT CCAAAGCTTCATTCAATGGCTTTTATCTGCTAAACCATAA
AA sequence Show only first row Show all	>Potri.005G065400.1 pacid=42803370 polypeptide=Potri.005G065400.1.p locus=Potri.005G065400 ID=Potri.005G065400.1.v4.1 annot-version=v4.1 MSLLMDSTSSSLLLSPPPFHSKDETDAPVLYSSFLQKQANMPTEFIWPIGDLVHNQDELKEPLIDLDGFLKGDERATADAAELVRTACLNHGFFQVINHG VDIGLIHAAHEEIDKIFKLPLDKKLSTRRKPGDVSGYSGAHAHRYSSKLPWKETFSFGYHGDDDSEPLVVDYFKSVLGENFEHTGWVYQRYCEAMKKVSL VIFELLGISLGVDRLHYRKFFEDGSSIMRCNNYPPCNNSSLTLGTGPHCDPTSLTILHQDQVGGLEVFANNKWQAIRPRPDALVVNIGDTFTALSNGRYQ SCLHRAVVNRERERKSLVFFVSPKEEKVVRPPQDLVCREGPRKYPDFTWSDLLEFTQKHYRADVATLQSFIQWLLSAKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51810		AT2353, GA20OX2...	gibberellin 20 oxidase 2 (.1)		Potri.005G065400 [exp]	0	1	GA20ox2-2
AT1G45474		LHCA5	photosystem I light harvesting...		Potri.014G029700 [exp]	4.47	0.9562	2,Pt-LHCA5.2
AT4G37740	GRF	ATGRF2	growth-regulating factor 2 (.1...		Potri.003G118100 [exp]	6.00	0.9296
AT2G20340			Pyridoxal phosphate (PLP)-depe...		Potri.004G036200 [exp]	7.74	0.9022
AT5G08640		ATFLS1, FLS	flavonol synthase 1 (.1.2)		Potri.004G139700 [exp]	9.79	0.9112	FLS4,Pt-FLS.4
AT2G45130		ATSPX3	ARABIDOPSIS THALIANA SPX DOMAI...		Potri.002G143900 [exp]	11.95	0.8323
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012466 [exp]	14.24	0.9186
AT2G26580	YABBY	YAB5	YABBY5, plant-specific transcr...		Potri.006G067800 [exp]	17.46	0.9277
AT1G64300			Protein kinase family protein ...		Potri.014G095200 [exp]	17.74	0.9126
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Potri.004G135600 [exp]	20.78	0.8651
AT2G25080		ATGPX1	glutathione peroxidase 1 (.1)		Potri.018G017500 [exp]	22.80	0.9107

Compare expression of checked genes

Potri.005G065400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.