Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63960 1817 / 0 EMB2780 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) AT1G67500 319 / 4e-90 ATREV3 recovery protein 3 (.1.2) AT5G67100 196 / 8e-51 ICU2 INCURVATA2, DNA-directed DNA polymerases (.1) AT1G08260 54 / 1e-06 ESD7, EMB142, EMB529, EMB2284, POL2A, TIL1, ABO4 TILTED 1, EARLY IN SHORT DAYS 7, EMBRYO DEFECTIVE 529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 142, ABA OVERLY SENSITIVE 4, DNA polymerase epsilon catalytic subunit (.1) AT2G27120 54 / 1e-06 POL2B, TIL2 TILTED 2, DNA polymerase epsilon catalytic subunit (.1) AT1G49180 0 / 1 protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G022200 [exp] 324 / 6e-92 AT1G67500 1426 / 0.0 recovery protein 3 (.1.2) Potri.007G045300 [exp] 177 / 7e-45 AT5G67100 1734 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Potri.004G185700 [exp] 56 / 2e-07 AT1G08260 3196 / 0.0 TILTED 1, EARLY IN SHORT DAYS 7, EMBRYO DEFECTIVE 529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 142, ABA OVERLY SENSITIVE 4, DNA polymerase epsilon catalytic subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033513 [exp] 1856 / 0 AT5G63960 1785 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10020862 [exp] 1270 / 0 AT5G63960 1218 / 0.0 DNA binding;nucleotide binding;nucleic acid binding;DNA-directed DNA polymerases;DNA-directed DNA polymerases (.1.2) Lus10029911 [exp] 323 / 2e-91 AT1G67500 1431 / 0.0 recovery protein 3 (.1.2) Lus10009366 [exp] 181 / 5e-46 AT5G67100 1807 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Lus10019338 [exp] 161 / 8e-40 AT5G67100 1751 / 0.0 INCURVATA2, DNA-directed DNA polymerases (.1) Lus10006269 [exp] 56 / 3e-07 AT1G08260 3052 / 0.0 TILTED 1, EARLY IN SHORT DAYS 7, EMBRYO DEFECTIVE 529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 142, ABA OVERLY SENSITIVE 4, DNA polymerase epsilon catalytic subunit (.1) Lus10020576 [exp] 53 / 2e-06 AT1G08260 3067 / 0.0 TILTED 1, EARLY IN SHORT DAYS 7, EMBRYO DEFECTIVE 529, EMBRYO DEFECTIVE 2284, EMBRYO DEFECTIVE 142, ABA OVERLY SENSITIVE 4, DNA polymerase epsilon catalytic subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0194 [poplar] [flax] DNA_pol_B-like PF00136 [poplar] [flax] DNA_pol_B DNA polymerase family B CL0219 [poplar] [flax] RNase_H PF03104 [poplar] [flax] DNA_pol_B_exo1 DNA polymerase family B, exonuclease domain CL0219 [poplar] [flax] PF14260 [poplar] [flax] zf-C4pol C4-type zinc-finger of DNA polymerase delta
Representative CDS sequence Show only first row Show all	>Potri.005G065800.6 pacid=42805141 polypeptide=Potri.005G065800.6.p locus=Potri.005G065800 ID=Potri.005G065800.6.v4.1 annot-version=v4.1 ATGAACCGAAACGGCTCCACCAGAAAACGCCCACCGCCAACGCCACAGCCACCGAACCCATCACCGGCGGTGAAGCACCAAGCCATCACTCCCACCGTCG ACGAAGAATTCCTCGATGAAGACGTCTTCCTTGACGAAACCCTCATTGCAGAAGACGAAGAGAATCTCAATAAAGAACGTCAAGTCCTTACTTCTCGTCT CTCAAAATGGGCCCGCCCGAAGTTATCAGATGGCTACGTGTCGCAATCGCAGAGTATCATATTTCAGCAACTCGAGATTGATTACGTGATCGGAGAGACA CATAAAGAACTTTTGCCTGATAGGTCAGGTTCTGCTGCTATTCTTAGAATTTTTGGGGTTACTGGAGAAGGACATAGTGTTTGCTGTCTTGTTCATGGAT TTGAGCCCTATTTCTACGTCAGCTGTCCTCCTGGAATGAACCCAGATGATATCTCCCATTTTCATAAGATTCTTGAGGGGAAGATGAGGGAGGTGAATAG GAACACTAAAGTACCCAAATTTGTGCGACGAATTGAATTGGTGCATAAAAGGAGCATAATGTATTATCAGCAGCAGCAATCTCATCCCTTTCTTAAGATT GTAGTTGCATTGCCAACGATGGTCTCTGGCTGCCGGGGTATCCTTGATAAAGGCATACAGATTGATGGACTCGGTATGAGGAGCTTCATGACATATGAAA GCAATGTCCTCTTTGCTCTCCGTTTCATGATTGACTGCAATGTTGTTGGTGGAAATTGGATTGAAGTACCTGCTGGAAAATACAAAAAGACTTCAAAGAG CTTATCAAATTGTCAATTGGAGTTTGATTGCTTATATTCAGAATTGATCAGCCATGCTGCTGAAGGGGAATTCTCAAAAATGGCCCCGTTTCGCATTTTG AGTTTTGATATAGAGTGTGCTGGTCGCAAAGGCCATTTTCCTGAGCCTACGCATGATCCTGTTATTCAGGTGGCAAATCTAGTAACTTTGCAGGGGGAGG ACCAGCCATTTGTTCGTAATATCATGACCCTGAACTCATGTTCTCCGATAGTTGGTGTGGATGTTATGTCTTTTGATACAGAGAGAGAAGTCCTGATAGC TTGGAAGGAATTTATTCGTGAAGTTGATCCAGATATTATAATTGGGTATAATATCTGCAAATTTGATCTGCCATATCTCATTGAGAGAGCTGCAACCTTG GGAATATCAGAATTTCCTGTCTTGGGCCGCATCAGGAACAGCAGGGTTCGGATCAAAGATGCGACCTTTTCATCCAGACAATATGGGACAAGGGAAAGTA AAGAAGTTACAGTTGAAGGCAGAGTTCAATTTGATTTGCTTCAGGTCATGCAACGAGATTATAAACTAAGTTCTTATTCATTAAACTCTGTTTCAGCACA CTTTCTCTCTGAGCAGAAAGAGGATGTTCACCATTCAATAATATCTGATCTTCAGAATGGGAATGCAGAAACTAGGAGGCGGCTTGCTGTATATTGTTTA AAGGATGCATATCTCCCACAGCGTCTCTTGGACAAACTGATGCTCATTTACAACTATGTGGAAATGGCCCGTGTAACTGGTGTCCCTCTCTCTTTTCTTC TTGCCAGGGGACAAAGCATCAAGGTGCTTTCTCAACTGTTGAGGAAGGCCAAGGAAAAAAACCTAGTTATTCCGAATGTCAAGCAGGCAGGATCTGAACA AGGAAAATATGAAGGCGCAACTGTTTTGGAGCCAAAAGCAGGATTCTATGAAAAGCCAATTGCAACACTGGATTTTGCATCCCTATATCCATCAATAATG ATGGCATACAATCTATGTTACTGCACTCTGGTAACACCTGAAGATGTTCGCAAACTGAACCTTCCACCTGAATGTATCAATAAAACTCCATCTGGTGAAA CTTTTGTGAAGTCAAATTTACAGAAGGGAATTCTACCTGAAATTCTTGAAGAACTATTAACTGCTCGAAAAAGAGCAAAAGCAGATTTGAAGGAAGCAAA GGATCCCTTTGAGAAGGCTGTTCTAGATGGTCGCCAACTGGCATTGAAGATTAGTGCAAATTCTGTTTATGGGTTTACAGGAGCTACAGTTGCCCAATTG CCATGTCTAGAAATATCCTCAAGTGTTACAAGCTATGGTCGACAGATGATTGAACACACAAAAAAACTTGTGGAAGACAAGTTTACTATACTAGGGGGCT ACGAACACAATGCAGAGGTTATTTATGGTGACACTGATTCAGTTATGGTGCAATTTGGAGTTCCTACTGTAGAAGCAGCGATGAAGTTGGGCCGTGAAGC TGCTGAGTGTATTAGTGGAACTTTCATCAAACCCATCAAGCTAGAGTTTGAGAAGGTTTATTATCCATATCTATTGATTAGCAAGAAGCGATATGCTGGT TTATTCTGGACAAATCCAGACAAATTTGACAAAATGGATACTAAAGGCATTGAAACAGTTCGAAGGGACAACTGTCTATTGGTAAAAAATCTGGTAACTG AGTGTCTTCACAAGATACTAATAGACAGAGATGTGCCTGGCGCGGTTCAATTTGTAAAGAACACAATTTCAGATCTTCTCATGAATCGCATGGATTTGTC ACTTCTGGTTATTACTAAGGGTCTGACAAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTAGCTGAACGCATGCGCAAGAGAGATGCT GCCACTGCTCCAAATGTTGGGGATCGAGTGCCTTATGTCATTATAAAAGGTGCAAAAGGTGCCAAGGCTTTTGAGAAATCAGAGGATCCCATCTATGTTC TAGAAAATAACATACCAATAGACCCCCAATACTATCTGGAAAACCAAATTAGCAAGCCACTTTTAAGAATTTTTGAGCCCATTTTGAAGAATGCCAGCAA GGAGCTTCTTCAGGGAAGTCACACAAGATCTATTTCCATATCTACTCCTTCAACAGGTGGCATTATGAAATTTGCAAAGAAACAGCTCACATGCATTGGC TGCAAAACCCTTCTTAGCAATTCAGATCGAACTCTCTGCTCAAACTGCAAAGGGAGAGAAGCAGAGCTGTACTGCAAATCAGTTTCTCAAGTATCTGAAC TAGAGCAACTTTTTGGGAGGCTGTGGACACAGTGCCAAGAGTGCCAAGGCTCTCTTCACCAGGATGTTCTTTGCACTAGCCGGGATTGCCCAATATTTTA TCGTAGGAAAAAGGCACAGAAAGATATGGCTGGAGCCAAGACGCAATTAGATCGATGGAGCTTCTAA
AA sequence Show only first row Show all	>Potri.005G065800.6 pacid=42805141 polypeptide=Potri.005G065800.6.p locus=Potri.005G065800 ID=Potri.005G065800.6.v4.1 annot-version=v4.1 MNRNGSTRKRPPPTPQPPNPSPAVKHQAITPTVDEEFLDEDVFLDETLIAEDEENLNKERQVLTSRLSKWARPKLSDGYVSQSQSIIFQQLEIDYVIGET HKELLPDRSGSAAILRIFGVTGEGHSVCCLVHGFEPYFYVSCPPGMNPDDISHFHKILEGKMREVNRNTKVPKFVRRIELVHKRSIMYYQQQQSHPFLKI VVALPTMVSGCRGILDKGIQIDGLGMRSFMTYESNVLFALRFMIDCNVVGGNWIEVPAGKYKKTSKSLSNCQLEFDCLYSELISHAAEGEFSKMAPFRIL SFDIECAGRKGHFPEPTHDPVIQVANLVTLQGEDQPFVRNIMTLNSCSPIVGVDVMSFDTEREVLIAWKEFIREVDPDIIIGYNICKFDLPYLIERAATL GISEFPVLGRIRNSRVRIKDATFSSRQYGTRESKEVTVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCL KDAYLPQRLLDKLMLIYNYVEMARVTGVPLSFLLARGQSIKVLSQLLRKAKEKNLVIPNVKQAGSEQGKYEGATVLEPKAGFYEKPIATLDFASLYPSIM MAYNLCYCTLVTPEDVRKLNLPPECINKTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPFEKAVLDGRQLALKISANSVYGFTGATVAQL PCLEISSSVTSYGRQMIEHTKKLVEDKFTILGGYEHNAEVIYGDTDSVMVQFGVPTVEAAMKLGREAAECISGTFIKPIKLEFEKVYYPYLLISKKRYAG LFWTNPDKFDKMDTKGIETVRRDNCLLVKNLVTECLHKILIDRDVPGAVQFVKNTISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDA ATAPNVGDRVPYVIIKGAKGAKAFEKSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPILKNASKELLQGSHTRSISISTPSTGGIMKFAKKQLTCIG CKTLLSNSDRTLCSNCKGREAELYCKSVSQVSELEQLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAGAKTQLDRWSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63960		EMB2780	DNA binding;nucleotide binding...		Potri.005G065800 [exp]	0	1
AT1G19880			Regulator of chromosome conden...		Potri.002G026600 [exp]	3.16	0.8042
AT1G06560			NOL1/NOP2/sun family protein (...		Potri.005G204900 [exp]	4.89	0.7596
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Potri.005G051100 [exp]	5.19	0.7717
AT4G37130			hydroxyproline-rich glycoprote...		Potri.007G036600 [exp]	5.65	0.7720
AT3G17340			ARM repeat superfamily protein...		Potri.010G152700 [exp]	6.48	0.7593
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	12.00	0.7685
AT5G16690		ORC3, ATORC3	origin recognition complex sub...		Potri.013G077200 [exp]	13.78	0.7547
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.016G084500 [exp]	15.29	0.7572
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.006G132400 [exp]	15.49	0.7581
AT2G27150		AtAAO3, At-AO3,...	Arabidopsis thaliana aldehyde ...		Potri.004G191300 [exp]	15.49	0.7470	Pt-AAO3.3,AAO2

Compare expression of checked genes

Potri.005G065800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.