Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G36240 113 / 1e-30 GATA GATA7 GATA transcription factor 7 (.1) AT5G25830 110 / 1e-28 GATA GATA12 GATA transcription factor 12 (.1) AT4G34680 109 / 1e-28 GATA GATA3 GATA transcription factor 3 (.1.2) AT3G60530 107 / 4e-28 GATA GATA4 GATA transcription factor 4 (.1) AT3G54810 107 / 2e-27 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT5G66320 107 / 3e-27 GATA GATA5 GATA transcription factor 5 (.1.2) AT4G32890 106 / 3e-27 GATA GATA9 GATA transcription factor 9 (.1) AT2G45050 105 / 4e-27 GATA GATA2 GATA transcription factor 2 (.1) AT3G24050 102 / 4e-26 GATA GATA1 GATA transcription factor 1 (.1) AT1G08000 103 / 5e-26 GATA GATA10 GATA transcription factor 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G142800 [exp] 110 / 3e-29 AT3G60530 189 / 1e-59 GATA transcription factor 4 (.1) Potri.010G223300 [exp] 111 / 1e-28 AT3G54810 148 / 8e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.004G211800 [exp] 110 / 1e-28 AT1G08010 150 / 4e-43 GATA transcription factor 11 (.1.2) Potri.014G058600 [exp] 108 / 1e-28 AT3G60530 189 / 7e-60 GATA transcription factor 4 (.1) Potri.018G044900 [exp] 110 / 2e-28 AT5G25830 247 / 2e-79 GATA transcription factor 12 (.1) Potri.008G038900 [exp] 110 / 2e-28 AT3G54810 150 / 1e-42 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Potri.006G237700 [exp] 110 / 3e-28 AT5G25830 246 / 2e-79 GATA transcription factor 12 (.1) Potri.001G188500 [exp] 108 / 6e-28 AT4G32890 201 / 7e-63 GATA transcription factor 9 (.1) Potri.009G123400 [exp] 108 / 7e-28 AT5G66320 179 / 8e-54 GATA transcription factor 5 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028178 [exp] 112 / 9e-30 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10037398 [exp] 107 / 1e-27 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10023684 [exp] 104 / 1e-27 AT3G24050 168 / 3e-52 GATA transcription factor 1 (.1) Lus10011430 [exp] 107 / 2e-27 AT4G32890 237 / 9e-77 GATA transcription factor 9 (.1) Lus10037572 [exp] 107 / 2e-27 AT4G32890 236 / 2e-76 GATA transcription factor 9 (.1) Lus10031096 [exp] 102 / 2e-27 AT5G66320 137 / 1e-40 GATA transcription factor 5 (.1.2) Lus10009227 [exp] 107 / 5e-27 AT3G54810 162 / 8e-47 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10038273 [exp] 105 / 7e-27 AT4G32890 219 / 1e-69 GATA transcription factor 9 (.1) Lus10037994 [exp] 106 / 1e-26 AT3G54810 160 / 6e-46 GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) Lus10025829 [exp] 105 / 1e-26 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger
Representative CDS sequence Show only first row Show all	>Potri.005G066100.2 pacid=42802285 polypeptide=Potri.005G066100.2.p locus=Potri.005G066100 ID=Potri.005G066100.2.v4.1 annot-version=v4.1 ATGCCCGATTTAGAGAAAGAACTTTTCCTTTGCTGCAGGGCCGGGCATTCAAGCGCAGAGATGGAGCTCTATATAGCTGCCACCTTCTGTCTTATTAGGG AGTGGCTAAGCTTTCACGGCGAGATCAAGTTGACAGCATGCCGAACATCATTGGAGATGCCACCCAAGACTGAAATGCTAAACCTCAATAGAGCCAGATC CCTTAGCTCCGGCCAACCTCAATCAAGTGATGATTTCGATTGGATAGGCAGTGAACTTAGCGCCCCTCAGGATCCCATAGAGTGTGTTACTGATGTCTTC GATGGGTTTATATCAACCAATGAGTTAAGCTTCTTGGAAGATTTTGGGGATTTTTTGGGAAAATCCGAAGAGGAGATAAAAACTACTCCATCGAGAGATT TTAAATTTGGTATGACTAAAAAGAAACCAAGAAGTAAACGGAGATTAAAGCAGCGTGCGTGGCCGATGAAAGATTTTGTGTTTTCTGCACTCGAAAATCA TGAATTCCGAAAGAGAATTTGCACCCATTGTCAAATTGACAAAACGCCGCAATGGAGGATTGGCCCACTGGGTCCGAAAACACTGTGTAACGCTTGTGGT GTGAGGTACAATACAGGGAGGTTACTCCCGGAGTATCGGCCGGCTGCAAGCCCCTCTTTTGACCAGAACAAGCATTCAAATCTTCATAAGCAGATATTGA GAAGGAGGGCCAATTTAATTTAA
AA sequence Show only first row Show all	>Potri.005G066100.2 pacid=42802285 polypeptide=Potri.005G066100.2.p locus=Potri.005G066100 ID=Potri.005G066100.2.v4.1 annot-version=v4.1 MPDLEKELFLCCRAGHSSAEMELYIAATFCLIREWLSFHGEIKLTACRTSLEMPPKTEMLNLNRARSLSSGQPQSSDDFDWIGSELSAPQDPIECVTDVF DGFISTNELSFLEDFGDFLGKSEEEIKTTPSRDFKFGMTKKKPRSKRRLKQRAWPMKDFVFSALENHEFRKRICTHCQIDKTPQWRIGPLGPKTLCNACG VRYNTGRLLPEYRPAASPSFDQNKHSNLHKQILRRRANLI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G36240	GATA	GATA7	GATA transcription factor 7 (....		Potri.005G066100 [exp]	0	1
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	2.23	0.9060
					Potri.014G079500 [exp]	3.00	0.8434
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.015G014850 [exp]	3.16	0.8394
AT5G51940		NRPE6A, NRPD6A,...	RNA polymerase Rpb6 (.1)		Potri.012G136900 [exp]	4.47	0.8855
AT3G26410		TRM11, AtTRM11	tRNA modification 11, methyltr...		Potri.001G207000 [exp]	6.00	0.8608
AT2G39100			RING/U-box superfamily protein...		Potri.008G215200 [exp]	6.92	0.8441
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Potri.010G025200 [exp]	7.21	0.8293
AT1G51200			A20/AN1-like zinc finger famil...		Potri.003G205500 [exp]	13.26	0.8331
					Potri.006G080001 [exp]	14.89	0.7848
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Potri.010G170050 [exp]	20.39	0.8149

Compare expression of checked genes

Potri.005G066100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.