Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13440 1061 / 0 glucose-inhibited division family A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014348 [exp] 1108 / 0 AT2G13440 1117 / 0.0 glucose-inhibited division family A protein (.1) Lus10026055 [exp] 693 / 0 AT2G13440 732 / 0.0 glucose-inhibited division family A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01134 [poplar] [flax] GIDA Glucose inhibited division protein A CL0063 [poplar] [flax] PF13932 [poplar] [flax] GIDA_assoc GidA associated domain
Representative CDS sequence Show only first row Show all	>Potri.005G066300.6 pacid=42805269 polypeptide=Potri.005G066300.6.p locus=Potri.005G066300 ID=Potri.005G066300.6.v4.1 annot-version=v4.1 ATGGCAACTCTCTCTCTCCATCTCTCCCGCCTCGCCCGCCACCACTTCCATTTATCTCCCCTTCTCTTCACACCCAAACACCTTTCCATCTCCTTCCCCC GCCGTCGCCACACCCCCGCTGCTTTCTTCCCTCTTTGCTCCTCCACCACCTCCTCCTCCTCCAGCCGCTTCTCAGTTTCAGCCACCACTCCCGCTTCTAC AGAGAGCTGTAGTGATGGTGGTGGAGTGATCAGTGATGAAAAATATGATGTGATTGTGGTTGGAGGAGGGCATGCTGGCTGTGAAGCAGCGCTTGCTTCT GCTCGTTTAGGGGCGAAAACGCTTCTTCTAACGCTAAATATTGATCGAATAGCATGGCAGCCTTGCAATCCAGCAGTAGGTGGGCCGGCGAAATCACAAC TAGTTCATGAAGTAGATGCTCTTGGTGGTGAAATTGGGAAGGTCGCTGATCGGTGCTATTTACAAAAGCGTGTGCTCAACACGTCGAGGGGTCCTGCTGT TCGAGCTTTGCGTGCACAAACTGACAAAAGGGAGTATGCTATGGAAATGAAAAAAATAGTGGAGAGCACTCCAAACCTTTCTATCAGAGAGGCAATGGCG ATTGATATATTATTAGGAAAGAATGACAATGTGGAAGGTGTTCACACTTTTTTCGGGATGAATTTCTATGCTCCGTCAGTTGTTCTTACAACCGGAACTT TCATGAGTGGTAAAATTTGGGTTGGTAGAACTTCTATGCCTGCTGGAAGAGCTGGGGAGTCAGCTTCAGAGGGACTGACTGAGAACTTGCAATGCCTTGG TTTTGAAACTGATCGATTAAAAACTGGAACCCCTGCACGTGTGGATATTCGTACAGTAGATTTTACTGGATTAGAACCCCAGCCTGGAGACAAAGAGGTA CATTGGTTTAGTTTTGATCCAGATGTACAAATTGAAAGGGAACAAATGTGTTGCTACCTAACACGCACAACAAAAATTACCCATCAGCTTATTAAGGAGA ACTTGCATGAAACTCCCACTTATGGAGGGTGGGTTGAAGCAAAGGGTCCTCGATACTGCCCTTCCATAGAAGATAAGATTGTTAGATTTCATGATAAAGA GTCCCATCAGATTTTTCTTGAACCTGAGGGTAGAAGTGTGCCTGAGCTGTATGTGCAGGGGTTCTCAACTGGTTTACCAGAGAGACTGCAGTTACCACTC TTGAGAACTTTGCCTGGACTTGAAAACTGTTCAATGCTGAGGCCTGCATATGCTGTGGAGTATGATTTCCTGCCTGCATATCAATGCTCAAGGTCTCTAA TGACGAAGAAAATTGATGGTCTTTTCTTCTCTGGTCAGATTAATGGGACAACAGGGTATGAAGAGGCTGCAGCGCAGGGAATTATTTCTGGTATTAATGC TGCAAGACATTCAGATGGTAAGCCCCTCATTGTTCTCGAGAGGGAAAGCAGTTACATAGGGACGTTGATTGATGATCTGGTCACTAAGGACCTTCGAGAG CCTTACCGAATGTTGACAAGCCGTTCAGAACACCGATTGCTTCTTCGATCTGATAATGCTGATAGTCGTCTAACACCTCTGGGGCGTGAAATTGGGTTGA TAGATGATAGACGGTGGAAATTATACCAGGATAAGCAAGCTCGAATCTTGGAAGAGAAAAAGCGGTTGAAAACAGTCAGGATTTCAGGAGGAGATTTGGC TGCTGACATTACCCGTGTGTCCGGACAGCCTGTGAGGGACTCTTCAACACTGGAGAGCCTTCTAAAGAAACCACATGTGCAATATGAAGTTTTTGATAAG CATGGTTTTGGGAATGAACAATTATCCAGAGCGGAGAAAGAGTGTGTAGAGATTGATATCAAGTATGAGGGCTTCATTATGCGCCAGCAAATTCAACTCC AACAGATGGCCCATCAACAAAATAGACCACTTCCTGAGGATTTGGATTACCATGCAATGATAACTTTGTCTCTTGAAGCTCGTGAGAAACTCTCCAAGGT CAGGCCACAAACCATCGGTCAAGCAAGTAGAGTGGGTGGGGTGAGCCCTGCTGACATTACGGCTCTTCTCATCATCATTGAAACCAGCCGAAGGAAAGCT CAGGCACAGAGAAGACACGAGATGCTGACTTCTGTCATGACAGAAACCGATCGTGAGTCCAGTGCCGCTTCACCAAAAACAATAACCTTGTGA
AA sequence Show only first row Show all	>Potri.005G066300.6 pacid=42805269 polypeptide=Potri.005G066300.6.p locus=Potri.005G066300 ID=Potri.005G066300.6.v4.1 annot-version=v4.1 MATLSLHLSRLARHHFHLSPLLFTPKHLSISFPRRRHTPAAFFPLCSSTTSSSSSRFSVSATTPASTESCSDGGGVISDEKYDVIVVGGGHAGCEAALAS ARLGAKTLLLTLNIDRIAWQPCNPAVGGPAKSQLVHEVDALGGEIGKVADRCYLQKRVLNTSRGPAVRALRAQTDKREYAMEMKKIVESTPNLSIREAMA IDILLGKNDNVEGVHTFFGMNFYAPSVVLTTGTFMSGKIWVGRTSMPAGRAGESASEGLTENLQCLGFETDRLKTGTPARVDIRTVDFTGLEPQPGDKEV HWFSFDPDVQIEREQMCCYLTRTTKITHQLIKENLHETPTYGGWVEAKGPRYCPSIEDKIVRFHDKESHQIFLEPEGRSVPELYVQGFSTGLPERLQLPL LRTLPGLENCSMLRPAYAVEYDFLPAYQCSRSLMTKKIDGLFFSGQINGTTGYEEAAAQGIISGINAARHSDGKPLIVLERESSYIGTLIDDLVTKDLRE PYRMLTSRSEHRLLLRSDNADSRLTPLGREIGLIDDRRWKLYQDKQARILEEKKRLKTVRISGGDLAADITRVSGQPVRDSSTLESLLKKPHVQYEVFDK HGFGNEQLSRAEKECVEIDIKYEGFIMRQQIQLQQMAHQQNRPLPEDLDYHAMITLSLEAREKLSKVRPQTIGQASRVGGVSPADITALLIIIETSRRKA QAQRRHEMLTSVMTETDRESSAASPKTITL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13440			glucose-inhibited division fam...		Potri.005G066300 [exp]	0	1
AT5G51690		ACS12	1-amino-cyclopropane-1-carboxy...		Potri.015G132100 [exp]	4.24	0.9386
AT5G02830			Tetratricopeptide repeat (TPR)...		Potri.006G132700 [exp]	4.79	0.9491
AT3G42630			Pentatricopeptide repeat (PPR)...		Potri.018G146900 [exp]	5.47	0.9274
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Potri.010G014500 [exp]	6.92	0.9449
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Potri.010G115000 [exp]	11.35	0.9409
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Potri.001G136600 [exp]	14.45	0.9304
AT3G44110		ATJ3	DNAJ homologue 3 (.1.2)		Potri.001G215132 [exp]	14.56	0.8908
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	14.69	0.9400
AT4G28080			Tetratricopeptide repeat (TPR)...		Potri.006G180100 [exp]	18.89	0.9384
AT5G44000			Glutathione S-transferase fami...		Potri.014G192300 [exp]	18.97	0.9301

Compare expression of checked genes

Potri.005G066300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.