Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CHR927
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18760 353 / 1e-103 CHR8 chromatin remodeling 8 (.1) AT1G03750 262 / 1e-73 SWI2, SNF2, CHR9 CHROMATIN REMODELING 9, switch 2 (.1) AT3G54280 252 / 3e-68 RGD3, ATBTAF1, CHR16, CHA16 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) AT3G19210 247 / 3e-68 ATRAD54, CHR25 homolog of RAD54 (.1.2) AT5G66750 236 / 3e-65 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT3G06010 235 / 2e-63 ATCHR12 Homeotic gene regulator (.1) AT5G19310 234 / 3e-63 Homeotic gene regulator (.1) AT2G28290 232 / 7e-62 CHR3, SYD SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3) AT2G25170 226 / 3e-60 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT5G18620 221 / 4e-59 CHR17 chromatin remodeling factor17 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G102800 [exp] 1823 / 0 AT5G63950 1103 / 0.0 chromatin remodeling 24 (.1) Potri.005G226500 [exp] 354 / 2e-104 AT2G18760 1362 / 0.0 chromatin remodeling 8 (.1) Potri.013G068400 [exp] 260 / 5e-71 AT3G54280 2717 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Potri.017G012400 [exp] 246 / 9e-68 AT1G03750 1162 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Potri.019G129900 [exp] 243 / 1e-67 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 242 / 2e-67 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.008G149900 [exp] 241 / 2e-65 AT3G06010 1485 / 0.0 Homeotic gene regulator (.1) Potri.010G091200 [exp] 239 / 1e-64 AT3G06010 1408 / 0.0 Homeotic gene regulator (.1) Potri.004G141500 [exp] 236 / 3e-64 AT3G19210 1259 / 0.0 homolog of RAD54 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015690 [exp] 1304 / 0 AT5G63950 1133 / 0.0 chromatin remodeling 24 (.1) Lus10037696 [exp] 1178 / 0 AT5G63950 1121 / 0.0 chromatin remodeling 24 (.1) Lus10003543 [exp] 356 / 1e-104 AT2G18760 1543 / 0.0 chromatin remodeling 8 (.1) Lus10033909 [exp] 351 / 9e-103 AT2G18760 1569 / 0.0 chromatin remodeling 8 (.1) Lus10013625 [exp] 266 / 1e-72 AT3G54280 2684 / 0.0 ROOT GROWTH DEFECTIVE 3, DNA binding;ATP binding;nucleic acid binding;binding;helicases;ATP binding;DNA binding;helicases (.1.2) Lus10033669 [exp] 250 / 3e-69 AT1G03750 1148 / 0.0 CHROMATIN REMODELING 9, switch 2 (.1) Lus10041735 [exp] 240 / 2e-66 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10014047 [exp] 237 / 2e-64 AT3G19210 1256 / 0.0 homolog of RAD54 (.1.2) Lus10019866 [exp] 234 / 1e-63 AT3G19210 1257 / 0.0 homolog of RAD54 (.1.2) Lus10012798 [exp] 235 / 1e-62 AT2G28290 1549 / 0.0 SPLAYED, CHROMATIN REMODELING COMPLEX SUBUNIT R 3, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.005G066600.3 pacid=42803580 polypeptide=Potri.005G066600.3.p locus=Potri.005G066600 ID=Potri.005G066600.3.v4.1 annot-version=v4.1 ATGGCGGATCTTTCAAAAAGCACCAACAAAAAACCAGTTAGTCTGAACCACCGCCACCACCGCCTGCTCCAAGACCTCTCCGCTCCTCCCAAACAACCAC AGTCAGCCACACCCTCAGAGGAGGACGAGGAAGAAGAGAGTGTATTCAATGTGAAGCTCGAAGGACGACGTCGTTTTTGCAAAGCTGAAGCAGAGGATGA TAGCATCCCTAATTTCTGTGGAATCACTGATTTTGATTCTTCTCCTGAAGAGGAGAAGCCTACGAAGGTTAAGATCGAAGGAAGACGGAGACTTTGCAAA GTCTCTTTTGGAGATAATGGGGATGGTGAGAGTAGAGAAGAAGTGAAAACTGATTCTAGTTTTGATGGTATTGCTGATTTTGATTCGCCCATACCGTCCA AAAATGTTGGTGATTGTGACAATAATAGGGGGGTTAATGAGATAAAAGATATTCTTAATGATTTGACCTCAAGGCTTGATCTTTTGTCGATTGAGAAAAG GAGAATGCCTGAAAATGGTAACGTGGTTAAGAAAGTTGATGTGGTTGAATATGCGAGTGCTGAGTCTTCGTTTTCTTCATCTTCTGGCCCATCTGATTCC TCATCGAATGTGAATAAGAATTTTGTGGAGGCGTATGAAGATGGTCATTTGCTGAGCGAGTCTTTCGCTGATGAGGTTGATAGTAAGGGCAATGACATTT GTAAAGGGCTAAAGAAGAACGAATATGGAAGGGTGGATGAAAAGTTAGTCCCTGTGGGAAAATCTATTGCGTCCAATGTTGTAGAAGAGGAAGGCGATGT GCAGATTGTCTCTGACCGTGATGACTATGTCACTAGGGTGGAGAAAACTAATAAAGTTGCTCTAAAAGTGAAGAAAAATGAACCCACAAGGTTCCATGAG AAATTGAGATCTGTAGGACGGTCTTCTTTGCTTAGTCTTCGAGATGAACCAGAGGACAAGGGAGATGACTGTGAGGTTTTGACCAGCAAAAAGGTGGTCA AGAAAGTTGGGAGACCTGATGCCATTGCTAAGTACAATTTATTATCTGATGAATCTAGTGTGACTGATGTGTTGGACAATCATGCAGATTCAGAGGATGA TAGTTGCATTACATTACCTGGACCAAAATCTACATACAAATTATCTGGTACAATTGCAAAAATGCTGTATCCTCATCAGCGTGAAGGTTTAAGATGGCTC TGGTCTTTGCATTGTCAGGGTAAGGGTGGAATCTTAGGAGATGACATGGGCTTGGGGAAAACGATGCAGATTTGCAGCTTTCTAGCAGGTCTCTTCCATT CCAAATTGATTAAGAGGGCATTGGTTGTGGCCCCTAAAACACTGCTCTCCCATTGGATTAAAGAACTGTCTGTTGTGGGGCTTTCTGCGAAGACTAGAGA ATATTTTGGGACATCTTTAAAAGCTCGGGACTATGAGCTGCAATATATACTTCAGGACAAAGGAATTCTCCTTACAACATATGATATTGTGCGGAACAAC TCAAAATCCTTACGAGGGGATCATTACTTTATCGATGATGAAAGCGAGGATAGTTACATATGGGACTATATGATTCTTGATGAGGGACATCTCATAAAAA ATCCTAGTACTCAGAGGGCTAAAAGTTTGCTAGAGATACCAAGTGCTCATTGTATTGTCATTAGTGGCACTCCCATTCAAAACAATCTTAAGGAATTGTG GGCCTTGTTCAACTTCTGTTGTCCTGGTCTACTTGGTGACAACAAATGGTTTAAGGAAACATATGAGCATCCCATACTTCGTGGAAATGAAAAAAATGCT TCTGATAGGGAGAAGCGTATTGGTTCAACGGTTGCAAAGGAATTGAGAGAACGCATTCAACCTTACTTTTTGCGCCGTATGAAGAATGAAGTATTCAAGG AAGATGATGCTACAACTGCTAAACTTTCCCGAAAGAATGAGATCATTGTGTGGCTCAGACTAACTGCTTGTCAGCGGCAACTATATGAAGCCTTTCTGCG GAGTGAAATTGTTCTTTCAGCTTTCGATGGCTCGCCATTGGCTGCCCTAACGATTCTGAAGAAAATATGTGATCACCCGCTTCTCTTGACAAAAAGAGCA GCCGAGGATTTGTTGGAGGGAATGGAGTCAATGCTAAATCCAGAAGATGCAGCTGTAGCAGAGAAATTGGCAATGCATCTAGCTGATGTTGCTGACAGAA CTGACACTGACTTTCAAGAGAAGCATGACAACATCTCTTGCAAGATCTCTTTTATATTGTCACTTCTGGATAATTTAATTCCAGAAGGGCACAATGTTCT TATATTCTCTCAAACTCGCAAGATGCTTAATCTCATCCAGGAATCCCTGGTATCCAATGGTTATGAGTTCATACGCATAGATGGTACAACAAAAGCTACT GACAGAACAAAAATTGTTAGTGACTTCCAAGAAGGCAATGGGGCTCCTATATTTCTCCTAACATCTCAAGTTGGTGGTCTTGGTCTTACACTTACAAAAG CAGACCGTGTGATTGTGGTTGATCCTGCTTGGAATCCTAGCACGGATAACCAGAGTGTTGATCGTGCATATCGAATTGGGCAAATGAAGGATGTTGTCGT ATACAGGCTAATGACTTGTGGAACTGTTGAAGAGAAAATTTATAGGAAGCAGATATTCAAGGGGGGATTATTTAGAACAGCAACTGAAAACAAAGAACAA ATTCGATACTTTAGCCAGCAGGATCTTCGGGAGCTATTCAGCCTCCCAAAGCAGGGGTTTAATATTTCCCTCACACAGCAACAGTTACATGAAGAGCATG ACAGCCAGCACAAAATGGATGAATTTCTGGAATCCCACATAAAATTCTTAGAGACTCAAGGTATAGCAGGAGTAAGTCACCACAGCCTATTATTCTCAAA GACAGCAACTGTACAAGTTGCACAAGAAGAAGAAGATGAGATAAGGAAAAAGGTATCCACAATGGTGGGAAATTCATCATCAAGTTATTCACTTGAACGT GATGTTGATGGGGCTGTGCATGCTTTCAATCCCAAGGATGTAAATCTGAAGAAGAAAAGCTCTTCCCCAGATAGTGTGGGTAAATTGACAGAATCTGAAA TCAAAGAGAGAATCAATCGGCTGTCACAAATACTTGGAAATAAGGTTACCATTTCAAGGTTACCAGACCAAGGAGCGAAACTACAAAAGCAGATTGGCGA ATTAAATTCAGAGCTCAACAAGCTGAGAATGGAGACAGCAACAGAGAGAGAAGGGATCATCAGTCTGGATGATTTAACTGGGGAATTTGAAAGACGATTG AATGTATAG
AA sequence Show only first row Show all	>Potri.005G066600.3 pacid=42803580 polypeptide=Potri.005G066600.3.p locus=Potri.005G066600 ID=Potri.005G066600.3.v4.1 annot-version=v4.1 MADLSKSTNKKPVSLNHRHHRLLQDLSAPPKQPQSATPSEEDEEEESVFNVKLEGRRRFCKAEAEDDSIPNFCGITDFDSSPEEEKPTKVKIEGRRRLCK VSFGDNGDGESREEVKTDSSFDGIADFDSPIPSKNVGDCDNNRGVNEIKDILNDLTSRLDLLSIEKRRMPENGNVVKKVDVVEYASAESSFSSSSGPSDS SSNVNKNFVEAYEDGHLLSESFADEVDSKGNDICKGLKKNEYGRVDEKLVPVGKSIASNVVEEEGDVQIVSDRDDYVTRVEKTNKVALKVKKNEPTRFHE KLRSVGRSSLLSLRDEPEDKGDDCEVLTSKKVVKKVGRPDAIAKYNLLSDESSVTDVLDNHADSEDDSCITLPGPKSTYKLSGTIAKMLYPHQREGLRWL WSLHCQGKGGILGDDMGLGKTMQICSFLAGLFHSKLIKRALVVAPKTLLSHWIKELSVVGLSAKTREYFGTSLKARDYELQYILQDKGILLTTYDIVRNN SKSLRGDHYFIDDESEDSYIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHCIVISGTPIQNNLKELWALFNFCCPGLLGDNKWFKETYEHPILRGNEKNA SDREKRIGSTVAKELRERIQPYFLRRMKNEVFKEDDATTAKLSRKNEIIVWLRLTACQRQLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRA AEDLLEGMESMLNPEDAAVAEKLAMHLADVADRTDTDFQEKHDNISCKISFILSLLDNLIPEGHNVLIFSQTRKMLNLIQESLVSNGYEFIRIDGTTKAT DRTKIVSDFQEGNGAPIFLLTSQVGGLGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQMKDVVVYRLMTCGTVEEKIYRKQIFKGGLFRTATENKEQ IRYFSQQDLRELFSLPKQGFNISLTQQQLHEEHDSQHKMDEFLESHIKFLETQGIAGVSHHSLLFSKTATVQVAQEEEDEIRKKVSTMVGNSSSSYSLER DVDGAVHAFNPKDVNLKKKSSSPDSVGKLTESEIKERINRLSQILGNKVTISRLPDQGAKLQKQIGELNSELNKLRMETATEREGIISLDDLTGEFERRL NV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18760		CHR8	chromatin remodeling 8 (.1)		Potri.005G066600 [exp]	0	1	CHR927
AT4G32730	MYB	ATMYB3R-1, PC-M...	C-MYB-LIKE TRANSCRIPTION FACTO...		Potri.018G038000 [exp]	1.00	0.8649	MYB222
AT5G63950		CHR24	chromatin remodeling 24 (.1)		Potri.007G102800 [exp]	1.73	0.8044	CHR932
AT5G52950			unknown protein		Potri.012G033800 [exp]	2.23	0.7910
AT4G01270			RING/U-box superfamily protein...		Potri.014G089800 [exp]	8.36	0.7805
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	9.48	0.7876
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.015G131400 [exp]	13.26	0.8291
AT5G04320			Shugoshin C terminus (.1.2)		Potri.010G229100 [exp]	18.57	0.6626
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	23.06	0.7296
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.002G179100 [exp]	26.94	0.7626
AT4G32630			ArfGap/RecO-like zinc finger d...		Potri.018G035000 [exp]	28.58	0.7100

Compare expression of checked genes

Potri.005G066600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.