Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63940 690 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G77280 654 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT1G21590 598 / 0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT2G16750 418 / 1e-137 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT4G35030 362 / 4e-118 Protein kinase superfamily protein (.1.2.3) AT5G65530 269 / 2e-82 Protein kinase superfamily protein (.1) AT2G18890 261 / 2e-80 Protein kinase superfamily protein (.1.2) AT1G55200 266 / 7e-79 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) AT3G24550 265 / 9e-79 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G23540 266 / 1e-78 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G102400 [exp] 1145 / 0 AT5G63940 722 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.005G182800 [exp] 769 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G077900 [exp] 728 / 0 AT1G77280 797 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.004G175100 [exp] 497 / 2e-167 AT2G16750 564 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.009G134700 [exp] 473 / 4e-158 AT2G16750 555 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Potri.002G019300 [exp] 356 / 2e-111 AT4G35030 387 / 7e-127 Protein kinase superfamily protein (.1.2.3) Potri.006G166600 [exp] 283 / 7e-89 AT2G18890 463 / 3e-163 Protein kinase superfamily protein (.1.2) Potri.018G096100 [exp] 288 / 4e-88 AT5G57670 619 / 0.0 Protein kinase superfamily protein (.2) Potri.006G173700 [exp] 288 / 5e-88 AT5G57670 654 / 0.0 Protein kinase superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024154 [exp] 771 / 0 AT1G77280 668 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10028661 [exp] 723 / 0 AT1G77280 848 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10000968 [exp] 716 / 0 AT1G77280 844 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10039518 [exp] 706 / 0 AT1G77280 610 / 0.0 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10014122 [exp] 422 / 2e-138 AT2G16750 507 / 4e-173 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10019787 [exp] 416 / 2e-136 AT2G16750 513 / 4e-175 Protein kinase protein with adenine nucleotide alpha hydrolases-like domain (.1) Lus10013566 [exp] 309 / 4e-97 AT4G35030 327 / 3e-107 Protein kinase superfamily protein (.1.2.3) Lus10017273 [exp] 310 / 4e-96 AT4G35030 325 / 2e-105 Protein kinase superfamily protein (.1.2.3) Lus10006957 [exp] 268 / 1e-83 AT2G18890 459 / 1e-162 Protein kinase superfamily protein (.1.2) Lus10013014 [exp] 271 / 3e-83 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G067000.1 pacid=42803285 polypeptide=Potri.005G067000.1.p locus=Potri.005G067000 ID=Potri.005G067000.1.v4.1 annot-version=v4.1 ATGGGCACTGACAAAACTGTCCCCGGTGGATGTGGAGACGACGGTGGTGGTGATGAAGGTGTAGTGTTGGTGGTGGGAGTGAAACTTGATGGACAAAGTA GAGAACTTTTGACATGGTCACTTGTGAAAATGGCACAGCCTGGTGACCGTGTAATTGCGCTTCATGTTCTTGATTCTGGAACTGGTAATGGTAACAGTGG TAAAGAATGTGTGGCAGGGACTGGATCAGTTTTGTCATTAGTGAAGATATTTGATTCATTGTTGGCTGTCTATGAAGGTTTTTGCAACTTAAAGCAGGTA GATTTGAAGCTAAAAGTGTGTAGAGGTGAATCGGTGAGGAAAACTCTGGTAAAGGAAGCAAAAGCAAGTAATGTTGCTAAGCTGATTGTGGGAACTTCCA AGACACGTCAGAAGCTCAACTCTTCAACCTCAACAGCAAAGTATTGTGCTAAAAAATTGTCGAAAGGTTGTTCTGTCTACGCAGTTAGGAGTGGCAAAAT TTTGTTCCAGAGAGAAGCAACAGTTGCAAAGAAATTGAACCAAGAAAGTCGAAAATGCTCACAAAAATCTCAGAATGAGAATTCTCTAAATCGTACTCCG CCATTGCTATTGCCGGATGATTCTGGAACACACGTATTGGAGGAGTCATGTTGGGATGGCAATGATGATAACTCATGGGCTTTGGTACCAATTCAAACGA GTAAGACACCGTCGGATTCAGATTCCAATGTGAGTGAAGCATTGGAGTCAAAACAGGGCTGGTCATTTCTTCGCCGGGTACTTTTCCCTAAGCAGCAGCA CTCGGAGAAAGCTCATGTGAAAAGGCTGTCTGTGGTTAAATGGGTATTTAGGATACCCACCCGAAATTCTTCATCTGTGGTACATCCAGATCAAAAACAG AATATTTCACTAGCAGATGCAGATCAGAACTCCAATTTAGAAGTCGAGAATTATGCAATCGTGCCAGTGGGGCCTGAGGTTGCTTGGACTCCCATTTCAC CATGCCATGACTTGAATGGCATCCCGGAAGAGTTGAAAAATCTACGCGAGAGATACTCATCATCATGTAGATTATTCAGCTATGAGGAACTTGCAATGGC CACCTCAAACTTCATTCCTGAGAATATGATAGGCAAGGGTGGTAGCAGTCATGTTTACAAAGGTTGCCTTCCTGACGGAAAGGAATTGGCAGTGAAAATC TTAAAGCCATCTGAAGATGTATTAAAAGAGTTTATTGCGGAAATTGAGATAATTACAACTTTACATCACAAGAACATAATCTCTCTATTTGGATTCTGTT TTGAGCAAAACAAATTACTCTTGGTTTATGACCTTTTATCAAGAGGAAGCCTGGAAGAGAATCTACATGGTAATAGGAAAGATGTGAACACGCTTGGTTG GCAAGAGAGATACAAGGTGGCTGTGGGTGTAGCAGAGGCACTTGATTACTTACATAATTGCTGTGATCAGCCTGTGATCCACAAGGATGTAAAATCTTCA AACATACTTTTATCAGATGATTTTGAGCCACAGCTGTCAGATTTTGGACTGGCTTGCTGGGCTTCTACTTCTTGCCATACAACATGCACTGATGTTGCAG GAACCTTTGGCTACTTGGCTCCAGAGTATTTCATGCATGGCAAAGTAAGTGATAAAGTTGATGTATTTGCATTTGGAGTTGTGCTCCTCGAGCTTCTTTC CGGTAGAAAGCCAATTAACAGTGAACATCCAAAAGGCCAGGAGAGCCTTGTCATGTGGGCGAAGCCAATTCTTGAGGGTGGTAAAGTTTCCCAATTGCTT CCGCGTCTAGGTAGTGAATATGATGATGATCACATCGAAAGAATGGTATTAGCTGCAACCCTTTGCCTCAGACGTTCACCTAAATGGAGACCACAAATGA GCCTTGTTCTGAAGCTCCTCCAAGGGGATGAGGAAGTCAAGAATTGGGCAAGGCATCAAGTTTGTGCATCAGAAGAACATGATGCCATGGACGGGGAAAC ATTTCCTAGCAATATCCAATCCCATCTTAATCTTGCATTACTAGATTTAGAGGATGATTCCCTTTCTATTAGCAGCACCGAGCAAGGTGTCTCAATAGAA GATTACTTGCAAGGGAGATGGAGCCGCACATCAAGCTTCCACTAA
AA sequence Show only first row Show all	>Potri.005G067000.1 pacid=42803285 polypeptide=Potri.005G067000.1.p locus=Potri.005G067000 ID=Potri.005G067000.1.v4.1 annot-version=v4.1 MGTDKTVPGGCGDDGGGDEGVVLVVGVKLDGQSRELLTWSLVKMAQPGDRVIALHVLDSGTGNGNSGKECVAGTGSVLSLVKIFDSLLAVYEGFCNLKQV DLKLKVCRGESVRKTLVKEAKASNVAKLIVGTSKTRQKLNSSTSTAKYCAKKLSKGCSVYAVRSGKILFQREATVAKKLNQESRKCSQKSQNENSLNRTP PLLLPDDSGTHVLEESCWDGNDDNSWALVPIQTSKTPSDSDSNVSEALESKQGWSFLRRVLFPKQQHSEKAHVKRLSVVKWVFRIPTRNSSSVVHPDQKQ NISLADADQNSNLEVENYAIVPVGPEVAWTPISPCHDLNGIPEELKNLRERYSSSCRLFSYEELAMATSNFIPENMIGKGGSSHVYKGCLPDGKELAVKI LKPSEDVLKEFIAEIEIITTLHHKNIISLFGFCFEQNKLLLVYDLLSRGSLEENLHGNRKDVNTLGWQERYKVAVGVAEALDYLHNCCDQPVIHKDVKSS NILLSDDFEPQLSDFGLACWASTSCHTTCTDVAGTFGYLAPEYFMHGKVSDKVDVFAFGVVLLELLSGRKPINSEHPKGQESLVMWAKPILEGGKVSQLL PRLGSEYDDDHIERMVLAATLCLRRSPKWRPQMSLVLKLLQGDEEVKNWARHQVCASEEHDAMDGETFPSNIQSHLNLALLDLEDDSLSISSTEQGVSIE DYLQGRWSRTSSFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63940			Protein kinase protein with ad...		Potri.005G067000 [exp]	0	1
AT1G72160			Sec14p-like phosphatidylinosit...		Potri.004G138200 [exp]	2.00	0.9094
AT5G01890			Leucine-rich receptor-like pro...		Potri.006G108600 [exp]	6.08	0.9121
AT2G40980			Protein kinase superfamily pro...		Potri.004G137600 [exp]	6.32	0.8924
AT4G22190			unknown protein		Potri.006G282500 [exp]	9.79	0.8902
AT2G25270			unknown protein		Potri.018G023200 [exp]	12.96	0.8975
AT5G06940			Leucine-rich repeat receptor-l...		Potri.006G056600 [exp]	13.22	0.9019
AT3G15820		ROD1	REDUCED OLEATE DESATURATION 1,...		Potri.001G204100 [exp]	13.49	0.8941
AT1G23790			Plant protein of unknown funct...		Potri.008G192300 [exp]	15.77	0.9067
AT2G02480		STI	STICHEL, AAA-type ATPase famil...		Potri.003G044900 [exp]	17.32	0.8891	STI.5
AT2G20320			DENN (AEX-3) domain-containing...		Potri.002G255500 [exp]	17.54	0.8332

Compare expression of checked genes

Potri.005G067000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.