Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63920 1389 / 0 TOP3A, AtTOP3alpha topoisomerase 3alpha (.1) AT2G32000 416 / 1e-131 DNA topoisomerase, type IA, core (.1.2) AT4G31210 88 / 2e-17 DNA topoisomerase, type IA, core (.1) AT5G13920 48 / 2e-05 GRF zinc finger / Zinc knuckle protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G148800 [exp] 405 / 2e-127 AT2G32000 1392 / 0.0 DNA topoisomerase, type IA, core (.1.2) Potri.006G279700 [exp] 105 / 6e-23 AT4G31210 1234 / 0.0 DNA topoisomerase, type IA, core (.1) Potri.T125504 [exp] 52 / 1e-06 AT5G13920 106 / 1e-25 GRF zinc finger / Zinc knuckle protein (.1) Potri.009G112676 [exp] 51 / 4e-06 AT5G13920 116 / 7e-28 GRF zinc finger / Zinc knuckle protein (.1) Potri.T125604 [exp] 50 / 4e-06 AT5G13920 115 / 1e-27 GRF zinc finger / Zinc knuckle protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004959 [exp] 1255 / 0 AT5G63920 1136 / 0.0 topoisomerase 3alpha (.1) Lus10035035 [exp] 415 / 6e-131 AT2G32000 1363 / 0.0 DNA topoisomerase, type IA, core (.1.2) Lus10021692 [exp] 283 / 1e-82 AT2G32000 1071 / 0.0 DNA topoisomerase, type IA, core (.1.2) Lus10020186 [exp] 91 / 2e-18 AT4G31210 1196 / 0.0 DNA topoisomerase, type IA, core (.1) Lus10026991 [exp] 58 / 2e-08 AT4G31210 490 / 4e-160 DNA topoisomerase, type IA, core (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01131 [poplar] [flax] Topoisom_bac DNA topoisomerase CL0167 [poplar] [flax] Zn_Beta_Ribbon PF01396 [poplar] [flax] zf-C4_Topoisom Topoisomerase DNA binding C4 zinc finger CL0413 [poplar] [flax] Toprim-like PF01751 [poplar] [flax] Toprim Toprim domain CL0167 [poplar] [flax] Zn_Beta_Ribbon PF06839 [poplar] [flax] zf-GRF GRF zinc finger
Representative CDS sequence Show only first row Show all	>Potri.005G067100.1 pacid=42802304 polypeptide=Potri.005G067100.1.p locus=Potri.005G067100 ID=Potri.005G067100.1.v4.1 annot-version=v4.1 ATGATAAAAGTTCTGAACGTGGCGGAGAAGCCTTCTGTGGCGAAATCGGTGGCGACGATACTCTCACGAAATCAGCTTCGAGTGAGAGACGGACGGTCCC GGTACAACAAGATATTCGAGTTCAACTACTCCATTAATGGCCAACAATGCCACATGCTTGTCACTTCCGTCACTGGTCATCTCATGGAAGTCGAATTCGA AGATAGATTCCGTAAATGGCATTCTTGTGACCCCGCCGATCTCTACACCGCTCCCGTCCGCAAATACGTCCCTGAGGATAAGTTGGACATCAAAAGGACA TTGGAGGAGGAAGCGAGGAGGTGTCACTGGCTTGTTTTGTGGTTAGATTGTGATAGAGAAGGAGAGAACATTGCATTTGAAGTGATGGAAGTTTGTAAAG GTGTAAATAGAAATCTTACAATAAGGAGGGCTCGGTTTTCGGCTCTAATTGAGAGGGATATTCATGAAGCAGCCCAAAATCTTATTGCTCCTAATCAGTG GTTTTCAGATGCAGTGGACGCTAGGCAAGAAATTGATCTCCGAATAGGTGCTTCTTTCACTAGGTTTCAAACGATGTTGTTGAGGGATAGGTTTGTTATT GATTCTGCTCAAGATGATAGAAATCTTGTTCTAAGTTATGGGCCTTGTCAGTTCCCTACCCTTGGATTTGTTGTGGAACGTTACTGGGAGATACAATCAC ATGAGCCAGAAGAGTTTTGGACTATCAATTGTACTCATAGATCAGATGAAGGCCTTGCTTCTTTCAATTGGATGCGTGGACATCTTTTTGATTATACCTC ATCTGTTATACTTTATGAAATGTGTGTTGAGGAACCAACTGCAACAGTCACGAAGGTCCAGCAGCAGGAGAAGTTGAAGTATCCCCCATATCCTTTGAGT ACGATTGAGCTTGAAAAACGTGCTTCACGGTACTTCCGGATGAGTTCTGAACAAACCATGAAGGTGGCAGAAGACTTGTACCAAGCTGGTTTCATTAGTT ATCCTCGTACGGAGACTGACAGCTTTTCTTCCAGGACTGATTTGCATACAATTGTACAAGAACATCAAGAGCATCCTGTATGGGGATCGTATGCACAAAG ATTGTTAGATCCTGGAGCAGGACTTTGGAGGAACCCTAGTAATGGTGGACATGATGACAAGGCCCACCCACCCATCCACCCAACAAAATTTTCAGCTGGA GAATCCCGGTGGAGTCAAGATCACCATAGATTGTATGAGCTGGTTGTTCGACATTTTCTGGCATGTGTCTCACAGCCAGCTGTTGGGGCAGAAACTGTTG TTGAAATTGATATTGCTGGTGAACGCTTTTCTGCATCAGGGAGAGTGATATTAGCTAAAAATTACTTGGATGTTTATCGCTTTGAATCATGGGGTGATTC AATGATTCCAACCTATGTCCAGGGACAACAGTTCATTCCGGCAACATTGACTTTGGACTCTGGAGTCACTAGACCGCCGCCTCTCTTAAGCGAAGCGGAT TTGTTAAGTTGTATGGACAAGGCCGGGATTGGTACAGATGCAACAATGCATGATCACATTAAAAAGCTGCTTGATCGATTCTACGTCACAAAGGATGCAA ACACTCGCTTCTCACCTACTAATCTTGGCGAGGCACTTGTTATGGGATATGATGACATGGGGTATGAACTTTGGAAACCCAATCTGAGATCACTGATGGA GTGCGATATGAAAGAAGTCAGCGTGGGCAATAAAAGTAAAGCTGAAGTTTTGGCAACTTGCTTGCAGCAGATGAAAGCTTGTTTCTTAGATGCAAAGGTA AACAAAGTAAAACTCTTGGAAGCCATGGCAATTTTCTTTAACAGATCTGATAGATCGAATGGAGATGACAGTAGCGCGTTGGGGGAAAATGTTCGGCCAT GTGGACTTTGCCAGGAAGCAAATATGGTGCTTAAGAAAAACCGGGATGGCAATTTCATGGTTGGATGCTCGGGTTTTCCACAGTGCAGGAATGCTGTATG GCTCCCTGGACCTGTTTTAGAAGCCACCATAACCAACAATATTTGCAACTCTTGCACTCCAGGTCCTGTTTACTTGATCCAATTTAAGTTCCGCCAGCTT GAAATACCACCAGGCTTCAATGTCAACCATTTAGGTTGCATTGGTGGTTGTGATGAAACTCTTAGACAGTTGATAGAAATCTGTGGAACCGGTTCCCGTG TTCAAGCAAGAGGTCGACCACCAACTACAACATCCAGCAACGGACCACCCACTACAACACCCAGCAACCCCCAACGAAGTAACTCTAGGCAGGCACCCTG CATATATTGTTATCAAACAGGGCATGCTTCAACTGATTGCCCTTCACGGATTTCAGCCACTCGACATGTGCAGTCTCATGGAATGAACCAACAGAATGGA GAATCTTCAATTCCATGTAGCACATGTGGAACGCCATGTGTTCTGCGAACAGCTAACACAGCAAATAACAGGGGAAGAAAGTTCTATTCATGTTCATCAC AAGCATGCAACTTCTTTGTATGGGAGGATAACCTCAACAACGGCTCTGCCCCAAGAAGTGCTCCTCGTCCAAATATGAGTAACTCGGCATCTAACCCTAG CAGGAGGGGCGGTCGTGGGAGGGGTGTTCAGAATGCAGGACGTGCAGCTGATGTAACTTTTGTATCAGCTACAGGTGAGCCGATATCTGGAAGAAGATGC TTCGTGTGTGGTGATCCATCACACTTCGCAAATGCTTGCCCCAGTCGTGGTTCCTGA
AA sequence Show only first row Show all	>Potri.005G067100.1 pacid=42802304 polypeptide=Potri.005G067100.1.p locus=Potri.005G067100 ID=Potri.005G067100.1.v4.1 annot-version=v4.1 MIKVLNVAEKPSVAKSVATILSRNQLRVRDGRSRYNKIFEFNYSINGQQCHMLVTSVTGHLMEVEFEDRFRKWHSCDPADLYTAPVRKYVPEDKLDIKRT LEEEARRCHWLVLWLDCDREGENIAFEVMEVCKGVNRNLTIRRARFSALIERDIHEAAQNLIAPNQWFSDAVDARQEIDLRIGASFTRFQTMLLRDRFVI DSAQDDRNLVLSYGPCQFPTLGFVVERYWEIQSHEPEEFWTINCTHRSDEGLASFNWMRGHLFDYTSSVILYEMCVEEPTATVTKVQQQEKLKYPPYPLS TIELEKRASRYFRMSSEQTMKVAEDLYQAGFISYPRTETDSFSSRTDLHTIVQEHQEHPVWGSYAQRLLDPGAGLWRNPSNGGHDDKAHPPIHPTKFSAG ESRWSQDHHRLYELVVRHFLACVSQPAVGAETVVEIDIAGERFSASGRVILAKNYLDVYRFESWGDSMIPTYVQGQQFIPATLTLDSGVTRPPPLLSEAD LLSCMDKAGIGTDATMHDHIKKLLDRFYVTKDANTRFSPTNLGEALVMGYDDMGYELWKPNLRSLMECDMKEVSVGNKSKAEVLATCLQQMKACFLDAKV NKVKLLEAMAIFFNRSDRSNGDDSSALGENVRPCGLCQEANMVLKKNRDGNFMVGCSGFPQCRNAVWLPGPVLEATITNNICNSCTPGPVYLIQFKFRQL EIPPGFNVNHLGCIGGCDETLRQLIEICGTGSRVQARGRPPTTTSSNGPPTTTPSNPQRSNSRQAPCIYCYQTGHASTDCPSRISATRHVQSHGMNQQNG ESSIPCSTCGTPCVLRTANTANNRGRKFYSCSSQACNFFVWEDNLNNGSAPRSAPRPNMSNSASNPSRRGGRGRGVQNAGRAADVTFVSATGEPISGRRC FVCGDPSHFANACPSRGS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63920		TOP3A, AtTOP3al...	topoisomerase 3alpha (.1)		Potri.005G067100 [exp]	0	1
AT3G23940			dehydratase family (.1.2)		Potri.003G176600 [exp]	4.00	0.7576
					Potri.015G059501 [exp]	4.69	0.6686
AT1G27090			glycine-rich protein (.1)		Potri.008G194200 [exp]	5.00	0.7206
AT5G07810			SNF2 domain-containing protein...		Potri.012G067000 [exp]	5.09	0.7453	CHR919
AT2G20110	CPP		Tesmin/TSO1-like CXC domain-co...		Potri.018G039300 [exp]	7.93	0.6978
AT4G31805			WRKY family transcription fact...		Potri.006G263800 [exp]	8.12	0.7053
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	10.95	0.7320	Pt-LON_ARA_ARA.2
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Potri.002G259000 [exp]	11.95	0.6815
AT1G77320		MEI1	meiosis defective 1, transcrip...		Potri.005G182500 [exp]	14.14	0.6922
AT3G21100			RNA-binding (RRM/RBD/RNP motif...		Potri.009G050600 [exp]	17.66	0.6956

Compare expression of checked genes

Potri.005G067100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.