Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G04160 786 / 0 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 748 / 0 ATSBT5.4 Subtilase family protein (.1) AT5G67360 549 / 0 ARA12 Subtilase family protein (.1) AT4G34980 539 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT5G45650 524 / 1e-175 subtilase family protein (.1) AT4G10520 518 / 6e-174 Subtilase family protein (.1) AT3G14240 518 / 9e-174 Subtilase family protein (.1) AT2G05920 511 / 3e-171 Subtilase family protein (.1) AT5G51750 505 / 1e-168 ATSBT1.3 subtilase 1.3 (.1) AT3G14067 503 / 5e-168 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G102100 [exp] 1196 / 0 AT2G04160 817 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.007G102250 [exp] 1191 / 0 AT2G04160 821 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050000 [exp] 1030 / 0 AT2G04160 806 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 1025 / 0 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050300 [exp] 1016 / 0 AT2G04160 786 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 831 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G165900 [exp] 810 / 0 AT2G04160 882 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.001G468800 [exp] 792 / 0 AT5G59810 939 / 0.0 Subtilase family protein (.1) Potri.006G001600 [exp] 746 / 0 AT5G59810 970 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023048 [exp] 833 / 0 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10006505 [exp] 792 / 0 AT2G04160 745 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10016064 [exp] 760 / 0 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10014591 [exp] 758 / 0 AT2G04160 716 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039087 [exp] 726 / 0 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039085 [exp] 713 / 0 AT5G59810 827 / 0.0 Subtilase family protein (.1) Lus10038774 [exp] 711 / 0 AT5G59810 839 / 0.0 Subtilase family protein (.1) Lus10039086 [exp] 707 / 0 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10038772 [exp] 701 / 0 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10032096 [exp] 686 / 0 AT1G20160 654 / 0.0 Subtilisin-like serine endopeptidase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.005G067200.1 pacid=42802803 polypeptide=Potri.005G067200.1.p locus=Potri.005G067200 ID=Potri.005G067200.1.v4.1 annot-version=v4.1 ATGGGCACTGCAGCAGCTTCTTACTATGTGTTTCTGTTTCTCACTCTCTTCGCTACCTTGCAGAGTCCAATTCTAGCTGCAAAAAAGTCTTATGTGGTTT ACTTGGGGAGACATTCCCATGTTTCTGAACCTTCTTCCTTGGATCTGGACAGGGTAACCGATTCCCATCATGAACTTCTGGGTTCTTGCATGCAGAGTAA GGAGAAGGCGAAAGAAGCCATATTCTACTCCTACACTCGTTATTTCAATGGTTTTGCAGCAATACTTGAAGATGAAGAAGCAGCTGAAATTTCAAAGCAT CCAAAAGTTTTATCTGTTTTTCGGAACCAAATAAGCAAACTACACACGACAAATTCATGGGACTTTCTTGGACTGGAAAGAGATGGAGAGATTTCAGCTG ATTCTATGTGGCTAAAGGCCAAATTTGGTGAAGGCGTAATTATTGGAACTCTTGATTTTGGTGTTTGGCCTGAATCGGAAAGCTTCAATGATGAAGGGAT GGGACCTGTTCCTTCTAAATGGAAAGGGTACTGTGATACAAACGATGGGGTTAAATGCAACAGGAAATTGATCGGAGCAAGATACTTTAGCAAAGGCTAC GAAGCTGAAGTTGGCCACCCACTTAATTCTTCATACCACACCGCGCGAGATTACAATGGTCACGGAACCCACACTCTCTCCACTGCAGGAGGTCGTTTTG TTTCTGGGGCAAACTTGCTTGGCTCAGCTTATGGAACAGCGAAAGGTGGTTCTCCCAACTCGAGAGTTGCTTCATACAAGGTTTGCTGGCCAGACTGTCT GGATGCTGATGTATTGGCTGGCTATGAGGCTGCTATACATGATGGTGTAGATATCCTCTCTGTTTCACTTGGATTTGTTCCAAACGAATACTTCAAAGAT AGAACTGCAATAGGAGCATTTCATGCCGTCGAGAATGGGATTCTCGTGGTTGCCGCAGCAGGAAATGAAGGACCTGCTCCTGGTGCAGTTGTAAATGTAG CTCCATGGATTCTTACAGTTGGTGCTAGCACCATCAGCAGGGAATTTCCATCTAATGCCATCCTTGGCAATCACAAACGATACAAGGGCCTCAGTATTAA TACCAATACTCAACCAGCTGGGAAGTTCTACCCCTTGATCAATTCGGTGGATGTTAAAGCTGCCAACGTCTCCAGTCATTTAGCAAAACATTGTCTCGTC GGATCCCTTGACCCAGTAAAAGTAAAAGGAAAGATTGTATATTGTACTCGTGACGAGGTCTTTGATGGAGAAAAGAGTTTGGTCGTTGCTCAATCTGGTG GCGTGGGGATGATACTTGCTGACCAATTTATGTTTAGTGTAGTTGATCCTATTGCGCACTTCGTTCCTACTTCAGTTGTCTCTGCAGTCGATGGGCTTTC CATTTTATCTTATATCTATAGTACAAAGACACCGGTAGCTTATATAAGTGGTGCCACAGAAGTGGGAACAGTGGCTGCACCTACCATGGCCAATTTTTCA TCTCCTGGGCCTAATCCGATCACTCCAGAGATCCTCAAGCCCGACATCACTGCACCTGGGGTGAATATTCTTGCTGCTTACACAGAGGCTTCAGGGCCAT TTCATATAGCAGGAGACCAGCGCCAAGTACTATTCAATATTATGTCAGGGACTTCAATTTCATGCCCCCATGTTTCTGGAATTGCTGGTCTTCTCAAAGC TATTCACCCTGATTGGAGTCCTGCTGCTATAAAATCTGCAATCATGACAACCGCAACAACGATCAGCAATGCCAGAGAGCCTATTGCCAATGCTTCTCTT ATCGAGGCAAACCCCTTGAATTATGGTGCAGGGCATATCTGGCCTAGCCGAGCAATGGAACCAGGCTTGGTCTATGACTTAACAACTAGAGATTATGTGG ATTTTCTATGTTCCATTGGCTATAATTCAACCCAGTTGTCCCTTTTTCTTGGTGAGCCATACATATGCCAGTCGCAGAACAACAGTAGCGTGGTTGATTT CAACTATCCATCCATTACTGTCCCGAATCTCTCAGGCAAGATCACGTTGTCTCGAACTTTGAAGAACGTGGGGACTCCGAGCTCGTATAGAGTTCATATC AAAGCACCTAGAGGAATATCTGTGAAGGTCGAGCCAAGAAGTTTGAGGTTCGATAAGAAACATGAAGAGAAAATGTTTGAGATGACTGTAGAGGCTAAGA AAGGGTTTAAGAATGATGACTATGTGTTCGGAGGGATTACCTGGTCCGATGGAAAACACCATGTAAGGAGTCCTATTGTGATAAAGAAGGCAGCCTCATA A
AA sequence Show only first row Show all	>Potri.005G067200.1 pacid=42802803 polypeptide=Potri.005G067200.1.p locus=Potri.005G067200 ID=Potri.005G067200.1.v4.1 annot-version=v4.1 MGTAAASYYVFLFLTLFATLQSPILAAKKSYVVYLGRHSHVSEPSSLDLDRVTDSHHELLGSCMQSKEKAKEAIFYSYTRYFNGFAAILEDEEAAEISKH PKVLSVFRNQISKLHTTNSWDFLGLERDGEISADSMWLKAKFGEGVIIGTLDFGVWPESESFNDEGMGPVPSKWKGYCDTNDGVKCNRKLIGARYFSKGY EAEVGHPLNSSYHTARDYNGHGTHTLSTAGGRFVSGANLLGSAYGTAKGGSPNSRVASYKVCWPDCLDADVLAGYEAAIHDGVDILSVSLGFVPNEYFKD RTAIGAFHAVENGILVVAAAGNEGPAPGAVVNVAPWILTVGASTISREFPSNAILGNHKRYKGLSINTNTQPAGKFYPLINSVDVKAANVSSHLAKHCLV GSLDPVKVKGKIVYCTRDEVFDGEKSLVVAQSGGVGMILADQFMFSVVDPIAHFVPTSVVSAVDGLSILSYIYSTKTPVAYISGATEVGTVAAPTMANFS SPGPNPITPEILKPDITAPGVNILAAYTEASGPFHIAGDQRQVLFNIMSGTSISCPHVSGIAGLLKAIHPDWSPAAIKSAIMTTATTISNAREPIANASL IEANPLNYGAGHIWPSRAMEPGLVYDLTTRDYVDFLCSIGYNSTQLSLFLGEPYICQSQNNSSVVDFNYPSITVPNLSGKITLSRTLKNVGTPSSYRVHI KAPRGISVKVEPRSLRFDKKHEEKMFEMTVEAKKGFKNDDYVFGGITWSDGKHHVRSPIVIKKAAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G04160		AIR3	AUXIN-INDUCED IN ROOT CULTURES...		Potri.005G067200 [exp]	0	1
					Potri.016G037000 [exp]	9.79	0.7934
					Potri.017G153100 [exp]	30.98	0.7062
AT5G05340			Peroxidase superfamily protein...		Potri.013G156500 [exp]	37.22	0.7391	Pt-PRX1.15
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G086000 [exp]	48.51	0.7330
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.002G076001 [exp]	48.65	0.7574
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	68.14	0.7081
AT5G16820	HSF	ATHSF3, ATHSFA1...	ARABIDOPSIS THALIANA CLASS A H...		Potri.011G051600 [exp]	96.54	0.6760
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.001G274600 [exp]	99.57	0.6661	F3'5'H2
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Potri.008G088900 [exp]	145.98	0.6958	CYP704B3
AT3G03720		CAT4	cationic amino acid transporte...		Potri.019G039600 [exp]	174.72	0.6786

Compare expression of checked genes

Potri.005G067200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.