Plant FIBer expression Database

Potri.005G067300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G39450 569 / 0 F-box family protein (.1)
AT5G39480 520 / 2e-179 F-box family protein (.1)
AT5G39490 508 / 1e-174 F-box family protein (.1)
AT5G39460 494 / 3e-169 F-box family protein (.1)
AT5G39470 66 / 2e-12 F-box family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G102000
[exp]
1040 / 0 AT5G39450 572 / 0.0 F-box family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015691
[exp]
724 / 0 AT5G39450 551 / 0.0 F-box family protein (.1)
Lus10037697
[exp]
712 / 0 AT5G39450 544 / 0.0 F-box family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Potri.005G067300.1 pacid=42805266 polypeptide=Potri.005G067300.1.p locus=Potri.005G067300 ID=Potri.005G067300.1.v4.1 annot-version=v4.1
ATGATGCCTGAATTAAGTGATTCATGCTTGCTTCTCGATCTTCCTGATGATGTATTTACCATTATATGTCGGTTCCTATCGACAAGGGACATCTGTACTC
TAAGTCTTTGCTGCCGGAGCTTATATGTTCTTGTGGCATCTGAGAAAGTCTGGCTCACCCAATGTGACATGGTAGGAATTGTCCCTCACCGGGATCTGCT
GGAGTGGCGGAAGGGCGTGTCATCTTATAGGGCATTATGTCGCTTCCTTGTTAGTGTTAAGCCGTTAATTGGAATCTGGGTTCACCAAAATCCCGAGCTT
GGTAATGTAGTTTATGTCATGCCAGGTTTTGTATCTGTTGTTGGATGCCGGATTTTACCTCAGGAGTTAGGTCCTTTAGGTATCGAGGAGGGTCCTATTT
TATGGGCACCGGTGTTTGAAATAATAGGTGACCTTGATGGTTCCACAGCATTTTTCCTACATGGAAGAGAGAAAGGGAATGACTATGTTTATCCTGGTTC
AGTCAAGTCTGTTGAGAGGAATTGCAATGTCCTGCTGCTTGAGGTTGACCTTAGGCAACAGAAGAGTAAATTATTCCCTAATAAGAGCTTTGCCTATAAC
TCAGATAGGGAGCTAGCAAGAAATGTTTCTAGGTCACATAGTGAATTGCCAGGGTCACAGAGGATGATCATACAATGTGAGGCTCAGGTGCCTTTTAGCC
GCTTGGCTTTCAGCGACAGAAGAAAGTTGATTGAGGTTGTCACAACCCAAGTTGGTCAAAAGGTATCCGATTTGGCAAATAGTCTGCTATTTCCTCGGTT
GAGGAATGATGAAGAGAATTTTCAGAAAGATTTGGCACTCTTGTTTGAACGGAGATCAGTTCTTTTGAAAATGTATAATCTTGGTCAAGGCTTCAATTGG
AAGGAAGCTCCTGAAGTGCCTTTTGATCCTATGCAACTGCAATTGAGTGAGGTTAGGAAGATTCTTGATCAGTCGAGTGGGTCTCTGAACGAGGATGATA
ATCAGATGCAGTCCAACACTAAGAGAACCCTTGGTGGGTATTTCAGAGCAAGCATCAGACAGATTTTGGGGAAGCCCCCCTCCATAAATGGTAGCCACAC
ACATTCCAAGCACAGTTGTTCAAGGAGTGAGAGAAAACATGCACCGCTGCATGATTTTTTAAGGTCAGGTGATACAATAGGGTTGGCATTACATGCCACT
GTGGTGAGGTTATCTTCTTATCGCGCATGGCCGAATATGCATGACAGCCGGTTTGCCCTATACAAATTACCCATGCGGGGTCCAAGAGCTGATGAAGAAT
ATGCTGGTTTATGGGGAGGGACTTTTGGTTGGCCTCCCGGGAAGCCCACTGAAGACAAGCCTGGAAAGGCTCTGTTCTTTCTTTTGGTCTCTTATGAGGA
GTCTGAAGGAAAAAGAAATCTCATTGCTACTAAGATATTAGAAGGCACCCATTATGTTCTGCATCCAAATGGCTCAGCAATGTTCATAGTTAATATTGAT
GAGCCTTTATACGATCCATTTCCTTGGGATGTTGATGAAAATTCCTTTCCTTTGATCATTAAGCATGCATTTGCAGGGGAGGGTATAGCAAATGGGTATG
GTTTCAGATATCCAGGCTCAAAGCCTGGTTCCCTCTTTGTAATTGAAAATGGTCTCCTTGTCTTTGTTTGGAAGGAGTCGAGAACTGTCTTGACCATGCA
GAGACTGAACTTACAAGAGCTTTTGAAGAAAGGTGAACGGGTGCCTGCTTTACCTCCCATTAGCAACTTTTCATACTTGACCAAGTCCTATTCAAATGTC
TTTACTGGCTTCTCAGCTGCCTCAGCTTGTTTGTCTTCACCAAGGCAAAGAAACTTATAG
AA sequence
>Potri.005G067300.1 pacid=42805266 polypeptide=Potri.005G067300.1.p locus=Potri.005G067300 ID=Potri.005G067300.1.v4.1 annot-version=v4.1
MMPELSDSCLLLDLPDDVFTIICRFLSTRDICTLSLCCRSLYVLVASEKVWLTQCDMVGIVPHRDLLEWRKGVSSYRALCRFLVSVKPLIGIWVHQNPEL
GNVVYVMPGFVSVVGCRILPQELGPLGIEEGPILWAPVFEIIGDLDGSTAFFLHGREKGNDYVYPGSVKSVERNCNVLLLEVDLRQQKSKLFPNKSFAYN
SDRELARNVSRSHSELPGSQRMIIQCEAQVPFSRLAFSDRRKLIEVVTTQVGQKVSDLANSLLFPRLRNDEENFQKDLALLFERRSVLLKMYNLGQGFNW
KEAPEVPFDPMQLQLSEVRKILDQSSGSLNEDDNQMQSNTKRTLGGYFRASIRQILGKPPSINGSHTHSKHSCSRSERKHAPLHDFLRSGDTIGLALHAT
VVRLSSYRAWPNMHDSRFALYKLPMRGPRADEEYAGLWGGTFGWPPGKPTEDKPGKALFFLLVSYEESEGKRNLIATKILEGTHYVLHPNGSAMFIVNID
EPLYDPFPWDVDENSFPLIIKHAFAGEGIANGYGFRYPGSKPGSLFVIENGLLVFVWKESRTVLTMQRLNLQELLKKGERVPALPPISNFSYLTKSYSNV
FTGFSAASACLSSPRQRNL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G39450 F-box family protein (.1) Potri.005G067300
[exp]
0 1
AT4G25160 U-box domain-containing protei... Potri.004G233000
[exp]
3.46 0.9173
AT3G17700 ATCNGC20, CNBT1 CYCLIC NUCLEOTIDE-GATED CHANNE... Potri.015G034000
[exp]
4.00 0.8916 ATCNGC19.5
AT1G28380 NSL1 necrotic spotted lesions 1, MA... Potri.004G047700
[exp]
4.00 0.9166
AT2G30070 ATKUP1, ATKT1P,... POTASSIUM UPTAKE TRANSPORTER 1... Potri.003G148200
[exp]
5.65 0.8627
AT1G15520 ATABCG40, ABCG4... Arabidopsis thaliana ATP-bindi... Potri.001G048700
[exp]
6.63 0.9032
AT5G57580 Calmodulin-binding protein (.1... Potri.004G035100
[exp]
8.36 0.8905
AT5G41610 ATCHX18 cation/H+ exchanger 18, ARABID... Potri.003G134900
[exp]
8.94 0.9002
AT1G22400 ATUGT85A1, UGT8... ARABIDOPSIS THALIANA UDP-GLUCO... Potri.006G022600
[exp]
9.53 0.8853
AT5G04410 NAC NAC2, ANAC078 Arabidopsis NAC domain contain... Potri.008G031800
[exp]
10.00 0.8531 NAC047,NAC2.2
Potri.005G223450
[exp]
15.09 0.9093

Potri.005G067300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.