Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10830 327 / 2e-113 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G22530 325 / 1e-112 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G61210 280 / 3e-95 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G55450 279 / 5e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G54150 278 / 3e-93 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G41380 192 / 2e-60 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G101800 [exp] 449 / 5e-162 AT4G22530 331 / 3e-115 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G066200 [exp] 409 / 3e-146 AT5G10830 339 / 2e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G103400 [exp] 396 / 7e-141 AT4G22530 317 / 1e-109 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G103200 [exp] 348 / 8e-122 AT5G10830 376 / 5e-133 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.006G042200 [exp] 177 / 1e-54 AT2G41380 342 / 1e-119 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.016G039051 [exp] 152 / 4e-45 AT2G41380 272 / 2e-92 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024476 [exp] 322 / 1e-111 AT5G10830 370 / 2e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10002994 [exp] 315 / 6e-109 AT5G10830 365 / 7e-129 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10001155 [exp] 181 / 4e-56 AT2G41380 330 / 1e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.005G067500.1 pacid=42803808 polypeptide=Potri.005G067500.1.p locus=Potri.005G067500 ID=Potri.005G067500.1.v4.1 annot-version=v4.1 ATGGGAATTCTGAATCCAGGTTTGTTTGACAAGCAGGCATCTATATATGTGGATGCAAGGCCAAGATATCCAAGCGAATGGTTCTCAATGTTGGCTGCTC TCACCCCTCACCACTGTTTAGCTTGGGATGTTGGTACTGGCAATGGTCAAGCGGCTGTTGGTGTGTCGGAGCACTACAAGCAAGTGATAGCAACTGACAT AAGTGAAGAACAACTAAAGCATGCCAAACCACACCCCCAAATTCGTTACTTGCATACCCCATTAACAATGTCCGATGATGAACTAGTGACATTACTTGGG GGTGAAAATTCAGTTGATCTCATTACTGTGGCCTCAGCTGTGCATTGGTTTGATCTGGAAAAGTTCTATCCAATCGTCAGGCGTGTTCTGAGAAATCCTG GAGGCATACTTGCAGTTTGGTGCTACTCAGGAATCCAGCTTAGCCCGGAAATTGATCTTCTCTTAAGGACCCACTTTGAGAGGACCTTTCCTTTTCGAAA CCCAAACGTCAAGTATGCAGTAGAGTGTTACAAGACACTTCCATTTCCTTTTGAAAGTGTAGGTGTTGGGAGCGAGGGGCAGCCACTGGAATTGGAGATG CAAAAGGAGATGTCTTTTGAGGGACTTTTGAAGCTTTTAAAGTCACTTTCATCATTTAATACAGCCAAGGGACAAGGTGTGGATTTACTGTCAGAAGAGG TTGTTAGAGAATTTGAGAGTGCATGGGGCGGGCCTGAATTGGTTAGAACTATTATCTATAAGACATATATGCTTGCAGGGAAAGTTAAGCTCTGA
AA sequence Show only first row Show all	>Potri.005G067500.1 pacid=42803808 polypeptide=Potri.005G067500.1.p locus=Potri.005G067500 ID=Potri.005G067500.1.v4.1 annot-version=v4.1 MGILNPGLFDKQASIYVDARPRYPSEWFSMLAALTPHHCLAWDVGTGNGQAAVGVSEHYKQVIATDISEEQLKHAKPHPQIRYLHTPLTMSDDELVTLLG GENSVDLITVASAVHWFDLEKFYPIVRRVLRNPGGILAVWCYSGIQLSPEIDLLLRTHFERTFPFRNPNVKYAVECYKTLPFPFESVGVGSEGQPLELEM QKEMSFEGLLKLLKSLSSFNTAKGQGVDLLSEEVVREFESAWGGPELVRTIIYKTYMLAGKVKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10830			S-adenosyl-L-methionine-depend...		Potri.005G067500 [exp]	0	1
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Potri.013G008400 [exp]	1.00	0.8729
					Potri.010G182150 [exp]	2.82	0.8563
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.009G018700 [exp]	6.00	0.8189
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Potri.010G226901 [exp]	7.74	0.8034
AT5G49960			unknown protein		Potri.003G008800 [exp]	10.90	0.8058
AT5G48970			Mitochondrial substrate carrie...		Potri.010G024100 [exp]	11.48	0.8150
AT3G48140			B12D protein (.1)		Potri.010G055300 [exp]	12.40	0.8006
AT5G63520			unknown protein		Potri.015G098800 [exp]	12.96	0.7924
AT5G17530			phosphoglucosamine mutase fami...		Potri.010G223000 [exp]	14.14	0.8217
AT1G69380		RRG	RETARDED ROOT GROWTH, Protein ...		Potri.008G092400 [exp]	14.69	0.7855

Compare expression of checked genes

Potri.005G067500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.