Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77310 320 / 7e-99 unknown protein AT1G21610 244 / 7e-71 wound-responsive family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G101201 [exp] 943 / 0 AT1G21610 286 / 2e-86 wound-responsive family protein (.1.2.3) Potri.002G078800 [exp] 460 / 5e-152 AT1G77310 417 / 4e-135 unknown protein Potri.005G182300 [exp] 439 / 5e-144 AT1G21610 449 / 3e-148 wound-responsive family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028676 [exp] 406 / 1e-131 AT1G21610 486 / 3e-163 wound-responsive family protein (.1.2.3) Lus10000853 [exp] 396 / 2e-127 AT1G21610 459 / 3e-152 wound-responsive family protein (.1.2.3) Lus10028666 [exp] 155 / 6e-40 AT1G77310 261 / 3e-78 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08729 [poplar] [flax] HUN HPC2 and ubinuclein domain
Representative CDS sequence Show only first row Show all	>Potri.005G067800.2 pacid=42802651 polypeptide=Potri.005G067800.2.p locus=Potri.005G067800 ID=Potri.005G067800.2.v4.1 annot-version=v4.1 ATGGAGGCCGGTCATGCCAAAGAGGGTGATACTAGCAGTCCTCCAAGGCAAAGGTTCTACATTGAACTCAAGCCTGGTGAGACAACAATAGTGTCATGGA AGAAGCTTTTGAAAGATGCAGCAGCAAACAAGGCAAATCCATCTCATTCTAATAATCAAACTGCCGCTGCCGCTGCCGGTGCTTCTACTTCTGCTTTTGT AATGGAGCCTGCTTCCGTGGAGACTGCCCAACAAGAGGCTCAGTTTGCTCTGGGCCAGCTCACTAAACCTATACCAAAAAATGCACCTTCTTCTAGTCGT CTTGGTTCTGTTATTGAGAAAATAGAGCAACTTTATGTGGGTAATCAGAGTAGTGATGAGGAAGAACTTGATGGTGCTCCTGATGAAGATCATTATGACA CCAAGGATTCTTTCATAGATGATACCGAACTGGATGAGTATTTTGAAGTTTATGAGTCAACTACCAAACATAATGGATTCTTTGTGAATAAGGGAAAATT AGAACACATGAATAGACCAATCTCATCCAGTCACTTCCAGCCGAAGAAAAGAAAGAATAATATGCAAAAAGCTAGAGAAGAGAAGGATGGTGATTGCGTT AGAGATAAACATGCAAAATTAGGTCAAGGAAGGATGAATGTGGCTACAGGGAATATACCAATGGATGAACCGTTTCCAACCAACACTCAGAATTTAGCTG TTAATGGTGAACATCATCATGATGGGAAACTGCATTCATTGATGCACCCCATATTTTCTGACAAAAAAGTTGCTGGTACTGATATAAGATCTGAATATTC TTCATATCCAGGAATCACAAACAGGGATGATTCCATCTCCAACACAGGACAGATTGACACTGAAAAACAGATGAATGGAGTCCTCCAGCCTGGGAATTTA GGTAGAATTGTGAAAGATACAAGTGAATTATCTAGAGTTGCATATCAAAAGTATCAAGAAAACAATGCTCCTGGCCAATCTGCGCCTCAATCCAAAAGAT TAGCCAGTGAAACAAGTTCCTCTCCCAAAGTTTCTCCCAGGAACAAGAAGGGAAGACATGAACTGCCTGACCTGAATCTTCCTCATTATCCAGTACAAGC TGAAAAGAAAACTGCCACCATGCATCCAAAGGATGTTTCTAGCTTGCAGCCAAAGGGCAGTATGGTTGAAAGAGCCATCAGGGATTTGGAGAAAGTAGTT GCAGAATCTAGGCCACGGAATACTGATGCTCAGGATGCTGATACTTCATCGATGTCTATCAAAAGAAGATTGCCATTTGAAGTGAAGCAGAAGCTTGCTA AAGTTGCCAGACTAGCGCAGTCAAGCCAAGGAAAAATATCAGAGGAATTAATCGGTCACCTTATGACCATTCTTGGGCATTTAATTCAGCTGAGGACACT GAAGAAAAATCTGAGAGAGATGGTTGAAACGGGACTAACAGCGAAGCAAGAGAAAGCTGACAGATTCCAGAAGATTAAAAAGGAGGTCATGGAGATGATA GAACTAAAGTTATTTAAACAAAGAGATAAAGCAGTTGTTGACTTTCAGAAAGGTATTATTCATGGAGAAAAAGGAACCATCAATAGGAAGTATGTTATGG ATGATAAGATGGAAGATAAGATATGTGATCTTTATGACCTATTTGTTCAGGGGATGGATGAAGACAAAGGTCCGCAAATTAGAAAGTTATATGCTGAGGT TGCAGAAATGTGGCCAAATGGAGCTATGGACAACCATGGGATAAAAATTGCTATTTGTAGGGCAAAGGAGCGTAGAAGGATATTCTACAATAATGAGAAG GTTCAAGAGAAAGCGAGGATAGAAAGGTTGTCCAGGCAGTGGAAGGGAAATAATGTTGGTGGTAAAGCAACTTCAAATGCTCGAGCAAAATGTGAGCAAG GAGGAGTCAGTGCCTCAGCAGCCATTGCTCAGTACCTTTCTGGACCTGCAAGACCTATCCCTTCATTTTTAAAAAGCCGCAGTGATGATCCTCCTAAACA AGAGAAGCTTGAGAAAATGACATTTCCTATGTTGAAAGAACACATGAAGCAGCAAAAGCGGGAGTTTGATCGTGGGTTAAAGAAATCTTCTCCAAAAGTG GACAGGAAATCTCACATGTCTCATATGCAGGATGTTGGGCTGCAAGATGGTAATTGCGTAATTAATAAGTAG
AA sequence Show only first row Show all	>Potri.005G067800.2 pacid=42802651 polypeptide=Potri.005G067800.2.p locus=Potri.005G067800 ID=Potri.005G067800.2.v4.1 annot-version=v4.1 MEAGHAKEGDTSSPPRQRFYIELKPGETTIVSWKKLLKDAAANKANPSHSNNQTAAAAAGASTSAFVMEPASVETAQQEAQFALGQLTKPIPKNAPSSSR LGSVIEKIEQLYVGNQSSDEEELDGAPDEDHYDTKDSFIDDTELDEYFEVYESTTKHNGFFVNKGKLEHMNRPISSSHFQPKKRKNNMQKAREEKDGDCV RDKHAKLGQGRMNVATGNIPMDEPFPTNTQNLAVNGEHHHDGKLHSLMHPIFSDKKVAGTDIRSEYSSYPGITNRDDSISNTGQIDTEKQMNGVLQPGNL GRIVKDTSELSRVAYQKYQENNAPGQSAPQSKRLASETSSSPKVSPRNKKGRHELPDLNLPHYPVQAEKKTATMHPKDVSSLQPKGSMVERAIRDLEKVV AESRPRNTDAQDADTSSMSIKRRLPFEVKQKLAKVARLAQSSQGKISEELIGHLMTILGHLIQLRTLKKNLREMVETGLTAKQEKADRFQKIKKEVMEMI ELKLFKQRDKAVVDFQKGIIHGEKGTINRKYVMDDKMEDKICDLYDLFVQGMDEDKGPQIRKLYAEVAEMWPNGAMDNHGIKIAICRAKERRRIFYNNEK VQEKARIERLSRQWKGNNVGGKATSNARAKCEQGGVSASAAIAQYLSGPARPIPSFLKSRSDDPPKQEKLEKMTFPMLKEHMKQQKREFDRGLKKSSPKV DRKSHMSHMQDVGLQDGNCVINK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77310			unknown protein		Potri.005G067800 [exp]	0	1
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.005G182900 [exp]	4.00	0.8117
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145050 [exp]	4.89	0.8013
AT2G43465			RNA-binding ASCH domain protei...		Potri.007G132100 [exp]	5.19	0.7833
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G242500 [exp]	5.19	0.8027
AT5G03450			Transducin/WD40 repeat-like su...		Potri.010G228000 [exp]	5.29	0.7742
AT2G01130			DEA(D/H)-box RNA helicase fami...		Potri.010G117800 [exp]	6.92	0.8194
AT3G04380		SDG31, SUVR4	SET DOMAIN PROTEIN 31, SET-dom...		Potri.013G048100 [exp]	10.39	0.7790
AT5G24350			unknown protein		Potri.015G008500 [exp]	10.72	0.7978
AT5G44800		PKR1, CHR4, MI-...	PICKLE RELATED 1, chromatin re...		Potri.010G172100 [exp]	11.48	0.7935
AT1G03760			Prefoldin chaperone subunit fa...		Potri.017G012500 [exp]	11.61	0.7270

Compare expression of checked genes

Potri.005G067800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.