Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57710 214 / 2e-63 Protein kinase superfamily protein (.1) AT3G57720 192 / 3e-55 Protein kinase superfamily protein (.1) AT3G57730 192 / 4e-55 Protein kinase superfamily protein (.1) AT1G16130 196 / 2e-53 WAKL2 wall associated kinase-like 2 (.1) AT1G79670 190 / 1e-51 WAKL22, RFO1 RESISTANCE TO FUSARIUM OXYSPORUM 1, Wall-associated kinase family protein (.1.2) AT1G69730 189 / 7e-51 Wall-associated kinase family protein (.1) AT1G79680 189 / 7e-51 ATWAKL10 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) AT1G17910 186 / 5e-50 Wall-associated kinase family protein (.1) AT1G16150 186 / 8e-50 WAKL4 wall associated kinase-like 4 (.1) AT3G57750 176 / 1e-49 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G004900 [exp] 218 / 3e-65 AT3G57710 270 / 8e-89 Protein kinase superfamily protein (.1) Potri.002G003300 [exp] 205 / 2e-60 AT3G57710 263 / 2e-86 Protein kinase superfamily protein (.1) Potri.013G020100 [exp] 198 / 2e-57 AT3G57710 203 / 2e-62 Protein kinase superfamily protein (.1) Potri.005G203401 [exp] 181 / 1e-50 AT1G16120 402 / 1e-134 wall associated kinase-like 1 (.1) Potri.018G148498 [exp] 184 / 3e-50 AT1G79680 497 / 5e-168 WALL ASSOCIATED KINASE (WAK)-LIKE 10 (.1) Potri.003G185700 [exp] 185 / 5e-50 AT1G16260 622 / 0.0 Wall-associated kinase family protein (.1.2) Potri.001G040756 [exp] 178 / 6e-50 AT1G69730 448 / 3e-152 Wall-associated kinase family protein (.1) Potri.003G185688 [exp] 184 / 2e-49 AT1G16260 615 / 0.0 Wall-associated kinase family protein (.1.2) Potri.002G075901 [exp] 180 / 2e-49 AT1G21270 507 / 5e-174 wall-associated kinase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004504 [exp] 180 / 4e-48 AT1G16130 411 / 5e-134 wall associated kinase-like 2 (.1) Lus10008105 [exp] 178 / 1e-47 AT1G16120 419 / 3e-137 wall associated kinase-like 1 (.1) Lus10034085 [exp] 172 / 2e-45 AT1G16130 526 / 5e-179 wall associated kinase-like 2 (.1) Lus10003063 [exp] 170 / 1e-44 AT1G16130 514 / 2e-173 wall associated kinase-like 2 (.1) Lus10013384 [exp] 169 / 5e-44 AT1G21270 430 / 3e-140 wall-associated kinase 2 (.1) Lus10013385 [exp] 161 / 1e-41 AT1G21270 437 / 2e-143 wall-associated kinase 2 (.1) Lus10013383 [exp] 159 / 1e-40 AT1G21270 427 / 4e-139 wall-associated kinase 2 (.1) Lus10013387 [exp] 147 / 2e-38 AT1G21240 250 / 5e-76 wall associated kinase 3 (.1) Lus10038077 [exp] 146 / 2e-36 AT1G21270 576 / 0.0 wall-associated kinase 2 (.1) Lus10014387 [exp] 140 / 8e-35 AT5G02070 493 / 8e-168 Protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.005G068000.8 pacid=42805039 polypeptide=Potri.005G068000.8.p locus=Potri.005G068000 ID=Potri.005G068000.8.v4.1 annot-version=v4.1 ATGGCTGCTGAAAGAAAGAGATTATTCATTACGAATGGAAGCTTGTTGCAAGAGAAGTTAATCTCCTCGAGTAATGGTAGATATTATCCCTTCCATAACT TCTCAATTGAAGAGCTTGAGAAAGCAACAAACAACTACGCTCCTCATTGCTTTCTTAGCTATAATCTCCTTGGTACATGGTACAAAGGTTCTCTTGATGG CCGAGTTCTCTCTATTTGCATACCTCGCTATCCAAATGTTCAGGCATCGCGTAATCAGATTATTAATGAGATTGTGAATGATGTTGCAATAGCAGCTCAG TTGAGTAGGCAGAGAAATTTTTTGAGGCTTATAGGATGTTGTCTTGAGACCCCAGTTCCGCTTTTAGTTTATGAATCTGTCAAACGAGGAAATGTCTCCG AGCAGATTCATGTCACTGGAGAGTTTCACTCTCAGCCTATGACATGGAAATGCAGGTTAAAGATTGCAAGGGAAATCGCTCATGCAGTGTCTTATCTTCA TACGGCATTCTCAAGACCTATCGTTCATAGAGGTATAAATCCCTTAAATATTTTCCTGGATGATTATAATGTTGCCAAATTGTCAAATTTCTCGCAATCC TTGTACATCTGTGAAGATGAAATAATCAAGACTGACAGAATCATAGGGACGCTAGGATATCTGCCCCCTGAGTATTTAGAACATGGTGAAATAACAGAGA AATTCGATGTGTACAGCTTTGGTACTCTACTACTTGAGCTTCTAACAGGGCGTCGGCCCTACAATCTTATTGCTAGAAGAGCAGGCTATTTTCGTTTTTG GATGAATAGAATGGAAGGTCATTTTGCAGGGAATTGCCTCAAATATCATGTTAAATGCCATAGCATTAATGAGGTAGTGGACTATAGAATTCTTGCAGGA GGAGGGATTAATGAGCAACAACAATGGCAAGCTGCAGTGGAGCTTGCTCTCAAATGCCTGGAGACAAGTAAAGATAAGAGACCGGCTATGGAAGAAGTTA CAAAAATACTTTGGCAAATTGAAAGGTCCCTGGCAACATTCCCAGAAAGACATAGCTCAGTCTATGACGATGGAAGGATATTTATGGAGGAAATGATTGC TTCTTATGAGGGCAGGTGCCATGTTCTCCAAAGTTTCTCTGGCGAAGAGCTAAAAAAGATGACAAACAATTATCATCCTGATTACATTTTCTGCTGTAGC AACATTGGCATATGGTACAAAGGTAATACAGAAAATGGAAATATATCCATGTACAAGATTAGTAATGTGAATTGGTGTGAGCATGTCAAGAATGAATTCA AGTTTGCTGCAGAGTTGAGTTCTCATAAGAATGTCTTGAAACTCTTAGGATACTGCCTTGAGACCTCAATTCCAACTCTAGTTTATGAATCCACGGGGAA TGGAACACTTTTTGATGAAATTCACTTCCATCCTGCACCTTTTTCTTTTCACATTAGGTTAGTAATAGCAAGACAGATAGCTGATCTAGTTGCATATCTC CACACGGAACTCTCTATACCCATTATCAGCAAGAACATAAAATCTGCAAATATTTTCCTGGATAAACATCATATTCCCAAGCTTTCCAATTTTTCACAAT CTGTTCAAATCATTGACGGTGAAGCATTCCCAACAAATCAAATTGAGGGGACCAAGGGATATATGTCCCCTGAGTATATAACTGAAGGTATAGTCACTCA GGAATTTGATGTATACAACTTCGGTGTGCTTCTGTTTGAGCTTTTGATAGGATTGAGACTCTTTGATCTATTTCATTTGGTTGATAAGGAAGGTGGATTA TTATTGGATCACCTTCAAAATTTTGTTAAATGGCATAGCATTAATGAGGTTGTGGATCCCAAGATTCCAAAAAACGAAGAAGGGCACGATGAGCAGCAGA AGTGGGAGGTTGTGTTAGAGCTGGCATTCAGATGCATGGTGACTGCAAAGGAGGAAAGGCCAAAGATGGTAGAAGTTGCAACTGAACTCAACAAACTTTA G
AA sequence Show only first row Show all	>Potri.005G068000.8 pacid=42805039 polypeptide=Potri.005G068000.8.p locus=Potri.005G068000 ID=Potri.005G068000.8.v4.1 annot-version=v4.1 MAAERKRLFITNGSLLQEKLISSSNGRYYPFHNFSIEELEKATNNYAPHCFLSYNLLGTWYKGSLDGRVLSICIPRYPNVQASRNQIINEIVNDVAIAAQ LSRQRNFLRLIGCCLETPVPLLVYESVKRGNVSEQIHVTGEFHSQPMTWKCRLKIAREIAHAVSYLHTAFSRPIVHRGINPLNIFLDDYNVAKLSNFSQS LYICEDEIIKTDRIIGTLGYLPPEYLEHGEITEKFDVYSFGTLLLELLTGRRPYNLIARRAGYFRFWMNRMEGHFAGNCLKYHVKCHSINEVVDYRILAG GGINEQQQWQAAVELALKCLETSKDKRPAMEEVTKILWQIERSLATFPERHSSVYDDGRIFMEEMIASYEGRCHVLQSFSGEELKKMTNNYHPDYIFCCS NIGIWYKGNTENGNISMYKISNVNWCEHVKNEFKFAAELSSHKNVLKLLGYCLETSIPTLVYESTGNGTLFDEIHFHPAPFSFHIRLVIARQIADLVAYL HTELSIPIISKNIKSANIFLDKHHIPKLSNFSQSVQIIDGEAFPTNQIEGTKGYMSPEYITEGIVTQEFDVYNFGVLLFELLIGLRLFDLFHLVDKEGGL LLDHLQNFVKWHSINEVVDPKIPKNEEGHDEQQKWEVVLELAFRCMVTAKEERPKMVEVATELNKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57710			Protein kinase superfamily pro...		Potri.005G068000 [exp]	0	1
AT1G07540	MYB	TRFL2	TRF-like 2 (.1)		Potri.006G086500 [exp]	3.16	0.8613
AT1G31410			putrescine-binding periplasmic...		Potri.003G105100 [exp]	4.89	0.8549
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	5.29	0.8612
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046600 [exp]	5.83	0.7966
AT5G63520			unknown protein		Potri.015G098700 [exp]	6.00	0.8119
AT3G54500			unknown protein		Potri.003G200600 [exp]	8.94	0.8112
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.005G155300 [exp]	10.19	0.8125
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.007G040400 [exp]	11.18	0.7856
AT4G28910		NINJA	novel interactor of JAZ (.1.2....		Potri.006G162900 [exp]	12.48	0.8055
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.016G122801 [exp]	13.74	0.7836

Compare expression of checked genes

Potri.005G068000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.