Plant FIBer expression Database

Potri.005G068400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G09230 487 / 4e-173 AtSRT2, SRT2 sirtuin 2 (.1.2.3.4.5.6.7)
AT5G55760 92 / 3e-20 SRT1 sirtuin 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G368100
[exp]
98 / 3e-22 AT5G55760 683 / 0.0 sirtuin 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029531
[exp]
474 / 1e-167 AT5G09230 543 / 0.0 sirtuin 2 (.1.2.3.4.5.6.7)
Lus10039614
[exp]
375 / 5e-128 AT5G09230 457 / 7e-161 sirtuin 2 (.1.2.3.4.5.6.7)
Lus10016619
[exp]
88 / 1e-18 AT5G55760 682 / 0.0 sirtuin 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0085 FAD_DHS PF02146 SIR2 Sir2 family
Representative CDS sequence
>Potri.005G068400.1 pacid=42805354 polypeptide=Potri.005G068400.1.p locus=Potri.005G068400 ID=Potri.005G068400.1.v4.1 annot-version=v4.1
ATGCTTTTGCACACACACTTCTTTCAGACTTTAAGAACTGCAAGAAGGGTTCTTGGAAATGTAATGAAAGATTCTGTTCAATTGAGCAGCAAGAATTGTA
TGCCATTGAGAAGAGGCAAAAGGGTTGTTTCTTTTCAAGGCTCTGCTGTAAGATTTGTACAAACATCATACCGTATTTCACTGCCTGCTGGGAACGCATT
TGGAAACCAAGAAAAAGTCTCTTCAAAAATTTTGAAAGACAAGAAGACAGTTCCTGATTCAGATCCTCCAAGTGATAGAGATGTTGATCTTTTGTACCAG
TTTTTTGATCGAAGCACCAAATTGGTGGTTTTGACTGGAGCTGGGATTAGTACAGAATGTGGAATTCCTGATTATAGAAGTCCAAATGGAGCCTACAGTT
CTGGTTTCAGACCTATTACCCATCAGGAGTTTGTCCGTTCAAGTCGAACACGTAGGCGATATTGGGCTAGGAGCTATGCTGGATGGAGACGGTTTCATGC
TGCAGAACCTAGTGCAGCCCATTTTGCTTTGGCATCTTTAGAAAAAGCTGGGCGGATTGATTTTATGATTACACAAAATGTTGATAGACTGCACCATCGT
GCTGGGAGCAACCCACTTGAAATACATGGAACTGTATACTCTGTGACTTGTCTAGATTGCAACTTTTCCTTTCCGCGGAGTTCATTTCAAGATCAACTGA
AGGCCCTCAATCCAAAGTGGGCAGAAGCAATTGAAAGTTTGGATAATGGAAGTCCTGGATCGGAGAAGAGCTTTGGCATGAAGCAAAGGCCTGATGGTGA
TATTGAGATTGATGAGAAATTCTGGGAGGCGGATTACCACATACCTGCATGCCCAAAATGCAATGGAGTGCTCAAACCTGATGTTGTTTTCTTCGGCGAT
AATGTCCCCAAGGATAGAGCAGACAAGGCAATGGACGCTGCAAAAGGTTGTGATGCTTTCCTTGTACTAGGATCATCTCTAATGACCATGTCTGCTTTTA
GACTTGTCAGAGCTGCTCACGAGGCAGGTGCTGCTACAGCAATTGTAAATTTAGGTGTGACGCGAGCTGATGATATCGTGCCTTTAAAGATAAATGCCCG
ATTAGGAGAGATATTGCCTAGAGTACTGAACATTGGATCCCTCAGCATCCCTGCTCTCTCCTGA
AA sequence
>Potri.005G068400.1 pacid=42805354 polypeptide=Potri.005G068400.1.p locus=Potri.005G068400 ID=Potri.005G068400.1.v4.1 annot-version=v4.1
MLLHTHFFQTLRTARRVLGNVMKDSVQLSSKNCMPLRRGKRVVSFQGSAVRFVQTSYRISLPAGNAFGNQEKVSSKILKDKKTVPDSDPPSDRDVDLLYQ
FFDRSTKLVVLTGAGISTECGIPDYRSPNGAYSSGFRPITHQEFVRSSRTRRRYWARSYAGWRRFHAAEPSAAHFALASLEKAGRIDFMITQNVDRLHHR
AGSNPLEIHGTVYSVTCLDCNFSFPRSSFQDQLKALNPKWAEAIESLDNGSPGSEKSFGMKQRPDGDIEIDEKFWEADYHIPACPKCNGVLKPDVVFFGD
NVPKDRADKAMDAAKGCDAFLVLGSSLMTMSAFRLVRAAHEAGAATAIVNLGVTRADDIVPLKINARLGEILPRVLNIGSLSIPALS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G09230 AtSRT2, SRT2 sirtuin 2 (.1.2.3.4.5.6.7) Potri.005G068400
[exp]
0 1
AT1G20830 MCD1 multiple chloroplast division ... Potri.002G006300
[exp]
17.08 0.8458
AT3G43540 Protein of unknown function (D... Potri.006G217700
[exp]
48.00 0.7868
AT4G15920 SWEET17, AtSWEE... Nodulin MtN3 family protein (.... Potri.008G220600
[exp]
56.38 0.8361
AT4G32590 2Fe-2S ferredoxin-like superfa... Potri.006G247300
[exp]
73.53 0.8198
AT2G20340 Pyridoxal phosphate (PLP)-depe... Potri.004G036200
[exp]
146.23 0.7924
AT5G61670 unknown protein Potri.012G114200
[exp]
154.72 0.7960
AT5G10470 KAC1, KCA1 KINESIN CDKA;1 ASSOCIATED 1, k... Potri.007G010700
[exp]
159.54 0.7836
AT5G22510 INV-E, At-A/N-I... Arabidopsis alkaline/neutral i... Potri.008G024100
[exp]
160.74 0.7766
AT3G26430 GDSL-like Lipase/Acylhydrolase... Potri.005G177700
[exp]
209.58 0.7749 ENOD8.3
AT1G16720 HCF173 high chlorophyll fluorescence ... Potri.014G000400
[exp]
212.41 0.7718

Potri.005G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.