Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52430 326 / 3e-104 PAD4, ATPAD4 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) AT3G48080 151 / 1e-38 alpha/beta-Hydrolases superfamily protein (.1) AT3G48090 148 / 8e-38 ATEDS1, EDS1 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT5G14930 115 / 4e-27 GENE101, SAG101 senescence-associated gene 101 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G100600 [exp] 1017 / 0 AT3G52430 320 / 4e-102 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Potri.012G074700 [exp] 193 / 1e-53 AT3G48080 426 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1) Potri.015G069600 [exp] 187 / 2e-51 AT3G48090 424 / 2e-141 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G005256 [exp] 145 / 6e-37 AT5G14930 317 / 3e-101 senescence-associated gene 101 (.1.2.3) Potri.019G007227 [exp] 144 / 3e-36 AT5G14930 300 / 3e-94 senescence-associated gene 101 (.1.2.3) Potri.001G290600 [exp] 131 / 4e-32 AT5G14930 328 / 2e-105 senescence-associated gene 101 (.1.2.3) Potri.009G086100 [exp] 127 / 8e-31 AT5G14930 309 / 4e-98 senescence-associated gene 101 (.1.2.3) Potri.001G291033 [exp] 44 / 8e-05 AT5G14930 84 / 4e-19 senescence-associated gene 101 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039617 [exp] 675 / 0 AT3G52430 375 / 1e-122 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10029534 [exp] 639 / 0 AT3G52430 349 / 2e-112 ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, alpha/beta-Hydrolases superfamily protein (.1) Lus10042937 [exp] 182 / 1e-49 AT3G48090 416 / 2e-138 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Lus10009502 [exp] 140 / 4e-35 AT5G14930 299 / 5e-94 senescence-associated gene 101 (.1.2.3) Lus10039444 [exp] 141 / 1e-34 AT3G01380 1238 / 0.0 transferases;sulfuric ester hydrolases;catalytics;transferases (.1) Lus10011697 [exp] 138 / 2e-34 AT5G14930 255 / 4e-78 senescence-associated gene 101 (.1.2.3) Lus10036644 [exp] 126 / 4e-31 AT3G48090 275 / 2e-87 enhanced disease susceptibility 1, alpha/beta-Hydrolases superfamily protein (.1.2) Lus10014518 [exp] 110 / 5e-25 AT5G14930 298 / 2e-93 senescence-associated gene 101 (.1.2.3) Lus10032169 [exp] 109 / 7e-25 AT5G14930 314 / 7e-100 senescence-associated gene 101 (.1.2.3) Lus10039472 [exp] 103 / 4e-23 AT5G14930 223 / 1e-66 senescence-associated gene 101 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.005G068700.2 pacid=42803742 polypeptide=Potri.005G068700.2.p locus=Potri.005G068700 ID=Potri.005G068700.2.v4.1 annot-version=v4.1 ATGGATACAGAAACTTCATCGTTTGAGACTAGTGAGATGCTGGCCACTTTCTTAGCTTCCACACCATTGCTACCCGAGTCATGGAGGCTCTGTAATCTTG CCAATGCAAATTCACCTCAGGGTTTTGTAGCAGAACAGATTGGAAGTATTGGGTATGTGGCCTTTTCTGGTATCGAATCGGTTTCAGGGTCAGACCCCAG TTTCAAGAATCTGGTTCCTTTGCCTGATGGTGGCAATAGCATGTTTCATCCATTGCATCACCAAACTGAAGGGGAAGAGCCAGTCTTGGTGCAGGGTGCC TTGCTGAGGATCTTTGAGAATATTTATAAGGACCCAAGTTTTCAAAACCAGATGCAAACACTAATGCAGACAAGCAAGTCAATTGTCTTCACAGGCCATT CCGTAGGTGGAGCAACTGCCTCTCTTGCTGCTCTTTGGCTCCTCTCTTACCTTCAATCAAATTTCTTAAACCTCTCGGTACTATGCATCACCTTTGGCTC TCCATTGCTAGGCAATGAGACCCTTTCTCGTGCCATTCTTCGCGAAAAATGGGGTGGCAAATTTTGCCATGTTGTATCGAAGTATGACATCATGCCAAGG ATGCTCTTTGTTCCAATGGATCCCATTGCTCCACTCTTAAAACCCCTGCTACATTTTTGGCACATGTATATGAATTCTCCGCATTTTGGATTGCTTGCTG TACCGTTAAGTGATGACAGCATGACTCAAATTTTCCAGCATGTATTATTTCACTTGGGAAGATTAGTAGAAGCTGGAGAAGAGGCAGTGACTGGTGGAAT GTTGAGGCCATTTGGGAACTATTTTTTCTGTTCGGAAGATGGAGCAATTTGCGTGGACAATGCAGCATCTGTTGTTAAAATGATGTATTTGTTGTTCGCG ACGGGGTTGCCTAGCTCTAGCATTGGGGATCATCTCAAGTATGGTGATTACGTAGGGAAAATCTCCTTGCAATTTCTGGAGAAGAGGAGTTTCATGCAAG GAGAGCTTCCTGAATCAAGCTACGAAGCAGGTGTTGTATTGGCTTTGCAGTCCACAGGAATATCTTGCAAGGAACAAATTGCAGGGCCAGCCAAAGATTG CCTAAAGGCTGCTAGGCGATTGGGGCGCACACCAAACCTCAACTGTGCCAATCTGGCAATTAAACTGTCCAAAATCAATCCTTATAGGGCTGAAATAGAG TGGTATAAAGCATTGTGCGACCGGTCTGATGATCAGATGGGTTACTACGACTCCTTTAAACAAAGGGGAGCCTCGAAAAGGGACTTCAAAGTCAACTTGA ACCGGCACAAGCTGGCTCAGTTTTGGGATAACGTAATAAACTTGTTTGAAAGCAATCAACTCCCCCATGATTTTCACAGACAAGGAAAATGGGTCAATGC TTCCCAGTTCTATAAGCTCCTTGTGGAGCCATTGGATATTGCTGAGTATTATCGAACAGGCATGCATCGTAGCAAGGGGCATTACATTGAACATGGAAGG GAGAGGAGATATCGTATTTTTGATAGGTGGTGGAAAGAGAGAAGTGTTAGAGGGGAAAATTATAAACGGAGCAAGTTTGCAAGTTTGACCCAAGACACAT GCTTCTGGGCAAGAGTGGAGGAAGCCAGGGATTTGTTAGATGCTCTTAGAAGCACTAGTGATCCGAGTCATTTGGCTTTGCTTTGGCAGAAGATAGATAG TTTTGCGAGCGATGCAAACGCGTTGGTTGAAACTAAGGAGGTGTCTATAGATGTAGTGGCAAAGAATTCAACCTATTCTTTGTGGCTAAAAGATTATAAT GAATTGAAATCACAAAAGGTGCAATTCCGTCCCTTGTTTTTGAGTTTTGTGAATGAGGAAATGGTTCCATAG
AA sequence Show only first row Show all	>Potri.005G068700.2 pacid=42803742 polypeptide=Potri.005G068700.2.p locus=Potri.005G068700 ID=Potri.005G068700.2.v4.1 annot-version=v4.1 MDTETSSFETSEMLATFLASTPLLPESWRLCNLANANSPQGFVAEQIGSIGYVAFSGIESVSGSDPSFKNLVPLPDGGNSMFHPLHHQTEGEEPVLVQGA LLRIFENIYKDPSFQNQMQTLMQTSKSIVFTGHSVGGATASLAALWLLSYLQSNFLNLSVLCITFGSPLLGNETLSRAILREKWGGKFCHVVSKYDIMPR MLFVPMDPIAPLLKPLLHFWHMYMNSPHFGLLAVPLSDDSMTQIFQHVLFHLGRLVEAGEEAVTGGMLRPFGNYFFCSEDGAICVDNAASVVKMMYLLFA TGLPSSSIGDHLKYGDYVGKISLQFLEKRSFMQGELPESSYEAGVVLALQSTGISCKEQIAGPAKDCLKAARRLGRTPNLNCANLAIKLSKINPYRAEIE WYKALCDRSDDQMGYYDSFKQRGASKRDFKVNLNRHKLAQFWDNVINLFESNQLPHDFHRQGKWVNASQFYKLLVEPLDIAEYYRTGMHRSKGHYIEHGR ERRYRIFDRWWKERSVRGENYKRSKFASLTQDTCFWARVEEARDLLDALRSTSDPSHLALLWQKIDSFASDANALVETKEVSIDVVAKNSTYSLWLKDYN ELKSQKVQFRPLFLSFVNEEMVP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52430		PAD4, ATPAD4	ARABIDOPSIS PHYTOALEXIN DEFICI...		Potri.005G068700 [exp]	0	1
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.005G224100 [exp]	1.00	0.9699
AT2G27310			F-box family protein (.1)		Potri.009G160700 [exp]	2.44	0.9593
AT4G37640		ACA2	calcium ATPase 2 (.1)		Potri.007G055500 [exp]	4.00	0.9570	Pt-ACA2.1
AT1G17420		ATLOX3, LOX3	Arabidopsis thaliana lipoxygen...		Potri.001G167700 [exp]	5.00	0.9564	LOX3.1
AT1G72450	ZIM	TIFY11B, JAZ6	TIFY DOMAIN PROTEIN 11B, jasmo...		Potri.003G068900 [exp]	5.19	0.9575
AT1G50600	GRAS	SCL5	scarecrow-like 5 (.1)		Potri.011G131100 [exp]	5.74	0.9480
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226400 [exp]	5.91	0.9521
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088222 [exp]	7.74	0.9524
AT4G33050		EDA39	embryo sac development arrest ...		Potri.006G226500 [exp]	7.93	0.9514
AT4G39830			Cupredoxin superfamily protein...		Potri.007G088290 [exp]	8.48	0.9519

Compare expression of checked genes

Potri.005G068700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.