Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G63800 959 / 0 MUM2, BGAL6 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) AT1G77410 905 / 0 BGAL16 beta-galactosidase 16 (.1) AT4G36360 678 / 0 BGAL3 beta-galactosidase 3 (.1.2) AT2G28470 675 / 0 BGAL8 beta-galactosidase 8 (.1.2) AT4G35010 669 / 0 BGAL11 beta-galactosidase 11 (.1) AT2G16730 667 / 0 BGAL13 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) AT3G13750 650 / 0 BGAL1 beta-galactosidase 1, beta galactosidase 1 (.1) AT5G63810 643 / 0 BGAL10 beta-galactosidase 10 (.1) AT1G45130 643 / 0 BGAL5 beta-galactosidase 5 (.1) AT4G26140 636 / 0 BGAL12 beta-galactosidase 12 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180600 [exp] 956 / 0 AT1G77410 1051 / 0.0 beta-galactosidase 16 (.1) Potri.002G080700 [exp] 942 / 0 AT1G77410 1115 / 0.0 beta-galactosidase 16 (.1) Potri.013G105100 [exp] 940 / 0 AT1G77410 1053 / 0.0 beta-galactosidase 16 (.1) Potri.004G174800 [exp] 736 / 0 AT2G16730 1115 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.009G134400 [exp] 729 / 0 AT2G16730 1098 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Potri.004G159800 [exp] 687 / 0 AT4G36360 1137 / 0.0 beta-galactosidase 3 (.1.2) Potri.005G232600 [exp] 672 / 0 AT4G36360 1332 / 0.0 beta-galactosidase 3 (.1.2) Potri.009G012400 [exp] 666 / 0 AT2G28470 1281 / 0.0 beta-galactosidase 8 (.1.2) Potri.007G018100 [exp] 664 / 0 AT4G36360 1499 / 0.0 beta-galactosidase 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033502 [exp] 950 / 0 AT5G63800 844 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10028538 [exp] 903 / 0 AT1G77410 967 / 0.0 beta-galactosidase 16 (.1) Lus10018138 [exp] 889 / 0 AT1G77410 928 / 0.0 beta-galactosidase 16 (.1) Lus10020875 [exp] 883 / 0 AT5G63800 785 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10033427 [exp] 880 / 0 AT1G77410 1016 / 0.0 beta-galactosidase 16 (.1) Lus10033500 [exp] 845 / 0 AT5G63800 757 / 0.0 MUCILAGE-MODIFIED 2, beta-galactosidase 6, Glycosyl hydrolase family 35 protein (.1) Lus10008259 [exp] 829 / 0 AT1G77410 908 / 0.0 beta-galactosidase 16 (.1) Lus10020877 [exp] 828 / 0 AT2G16730 733 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10014126 [exp] 701 / 0 AT2G16730 993 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1) Lus10019784 [exp] 696 / 0 AT2G16730 1052 / 0.0 beta-galactosidase 13, glycosyl hydrolase family 35 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF01301 [poplar] [flax] Glyco_hydro_35 Glycosyl hydrolases family 35 CL0202 [poplar] [flax] GBD PF13364 [poplar] [flax] BetaGal_dom4_5 Beta-galactosidase jelly roll domain
Representative CDS sequence Show only first row Show all	>Potri.005G069200.1 pacid=42804973 polypeptide=Potri.005G069200.1.p locus=Potri.005G069200 ID=Potri.005G069200.1.v4.1 annot-version=v4.1 ATGGGGTGGTGGTTAAGCTGGGTTGTCTTGACCGTGGCGGTAATCAGAGATATTGTTGTTAGAGGAGGAGATGTCACATATGATGGAAGATCTCTTATCA TTGATGGACAAAGGAAAATCCTGTTTTCGGGTTCAATTCACTATCCTCGCAGCACTCCAGAGATGTGGCCATCTTTGGTAGCAAAAGCTAGAGAAGGAGG GGTCGATGTGATTCAAACTTATGTGTTTTGGAATCTGCATGAGCCAAGACCTGGAGAGTATGATTTCAGTGGAAGAAATGACTTGGTGAGGTTCATAAAG GAAATCCAAGCACAAGGTCTCTACGTCTGCCTCAGGATTGGACCTTTCATCGAGAGTGAATGGACTTATGGGGGGTTCCCATTTTGGTTGCATGATGTCC CCGACATTGTTTATCGATCAGATAATGAGCCTTTCAAGTTTTACATGCAAAATTTTACCACAAAAATAGTGAACATGATGAAGTCAGAGGGTTTATATGC TTCGCAAGGAGGTCCAATAATACTATCACAGATTGAGAATGAATATCAAAATGTTGAAGCAGCTTTTCGTGACAAAGGACCCCCGTACGTCATCTGGGCA GCAAAAATGGCAGTTGAGCTCCAGACTGGTGTGCCATGGGTGATGTGCAAGCAAACTGATGCTCCTGACCCAGTGATAAACACATGCAATGGAATGAGAT GTGGAGAAACTTTTGGAGGACCTAATTCGCCAACAAAGCCGTCACTTTGGACAGAGAATTGGACATCATTCTATCAAGTATACGGTGGAGAACCGTATAT ACGGTCTGCTGAAGACATTGCCTTCCATGTAACCCTTTTTATTGCAAAAAATGGAAGCTATATAAATTACTACATGTTCCATGGTGGAACAAATTTTGGA AGAACTGCGTCGGCATATGTCATAACAAGTTATTACGATCAGGCACCACTTGATGAATATGGTTTAATTAGACAACCCAAATGGGGTCATCTCAAGGAGC TGCATGCTGCAATCAAGTCTTGCTCTTCAACAATACTTGAGGGAGTGCAGTCTAATTTCTCCTTGGGCCAACTTCAACAGGCCTATATTTTCGAAGAAGA AGGAGCAGGCTGTGCTGCATTTCTTGTTAACAATGACCAGAAAAATAATGCAACTGTTGAATTTCGAAATATAACCTTTGAGCTGCTTCCAAAGTCGATT AGTGTTCTACCTGACTGTGAAAATATAATCTTCAACACCGCAAAGGTAAATGCAAAGGGTAATGAGATAACCAGGACATCAAGTCAATTGTTTGATGATG CTGATAGGTGGGAAGCATATACAGATGTTATCCCTAACTTCGCAGATACTAACCTTAAATCAGATACCCTGTTGGAGCACATGAATACAACCAAAGATAA ATCAGATTATCTTTGGTATACTTTCAGCTTCCTACCAAATTCATCTTGCACTGAACCTATACTTCATGTGGAGTCTCTCGCGCATGTTGCATCTGCTTTT GTCAACAACAAATATGCAGGATCTGCACATGGAAGTAAGGATGCCAAGGGTCCCTTTACCATGGAAGCGCCGATAGTCTTAAATGATCAGATGAACACCA TTTCTATACTCAGCACTATGGTTGGATTACAAGATTCAGGAGCTTTCCTGGAGAGAAGATATGCAGGCTTAACGAGAGTGGAAATTAGATGTGCTCAACA AGAGATCTATAATTTTACCAATAATTATGAATGGGGATATCAGGCAGGGCTATCTGGAGAGAGCTTGAACATCTACATGAGAGAACATTTGGACAACATT GAATGGAGTGAAGTTGTTTCAGCTACGGATCAACCACTTTCTTGGTTTAAGATTGAATTTGATGCTCCAACGGGTAACGACCCAGTAGTTTTAAACCTAA GCACGATGGGGAAAGGAGAAGCATGGGTGAACGGACAAAGCATTGGACGTTACTGGCTTTCCTTTCTCACTTCTAAAGGGCAGCCTTCACAGACATTGTA CCATATACCTCGGGCATTTCTTAACAGTTCAGGGAACCTGCTGGTGTTGCTCGAGGAATCTGGAGGGGATCCTCTCCACATTTCATTAGACACTGTTTCA AGAACAGGATTGCAAGAACACGCTTCCCGTTATCACCCTCCACAGTAA
AA sequence Show only first row Show all	>Potri.005G069200.1 pacid=42804973 polypeptide=Potri.005G069200.1.p locus=Potri.005G069200 ID=Potri.005G069200.1.v4.1 annot-version=v4.1 MGWWLSWVVLTVAVIRDIVVRGGDVTYDGRSLIIDGQRKILFSGSIHYPRSTPEMWPSLVAKAREGGVDVIQTYVFWNLHEPRPGEYDFSGRNDLVRFIK EIQAQGLYVCLRIGPFIESEWTYGGFPFWLHDVPDIVYRSDNEPFKFYMQNFTTKIVNMMKSEGLYASQGGPIILSQIENEYQNVEAAFRDKGPPYVIWA AKMAVELQTGVPWVMCKQTDAPDPVINTCNGMRCGETFGGPNSPTKPSLWTENWTSFYQVYGGEPYIRSAEDIAFHVTLFIAKNGSYINYYMFHGGTNFG RTASAYVITSYYDQAPLDEYGLIRQPKWGHLKELHAAIKSCSSTILEGVQSNFSLGQLQQAYIFEEEGAGCAAFLVNNDQKNNATVEFRNITFELLPKSI SVLPDCENIIFNTAKVNAKGNEITRTSSQLFDDADRWEAYTDVIPNFADTNLKSDTLLEHMNTTKDKSDYLWYTFSFLPNSSCTEPILHVESLAHVASAF VNNKYAGSAHGSKDAKGPFTMEAPIVLNDQMNTISILSTMVGLQDSGAFLERRYAGLTRVEIRCAQQEIYNFTNNYEWGYQAGLSGESLNIYMREHLDNI EWSEVVSATDQPLSWFKIEFDAPTGNDPVVLNLSTMGKGEAWVNGQSIGRYWLSFLTSKGQPSQTLYHIPRAFLNSSGNLLVLLEESGGDPLHISLDTVS RTGLQEHASRYHPPQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G63800		MUM2, BGAL6	MUCILAGE-MODIFIED 2, beta-gala...		Potri.005G069200 [exp]	0	1
AT1G30760			FAD-binding Berberine family p...		Potri.001G462800 [exp]	8.66	0.6806
AT1G03060		SPI	SPIRRIG, Beige/BEACH domain ;W...		Potri.005G215400 [exp]	12.84	0.7115
					Potri.001G410554 [exp]	15.49	0.7138
AT2G16980			Major facilitator superfamily ...		Potri.002G016200 [exp]	21.26	0.7107
AT1G05065		CLE20	CLAVATA3/ESR-RELATED 20 (.1)		Potri.014G156600 [exp]	22.36	0.6870
AT1G30760			FAD-binding Berberine family p...		Potri.011G158700 [exp]	25.45	0.6843
AT4G18425			Protein of unknown function (D...		Potri.004G049000 [exp]	26.94	0.6664
AT4G02680		EOL1	ETO1-like 1 (.1)		Potri.005G214400 [exp]	30.59	0.6819
AT3G57620			glyoxal oxidase-related protei...		Potri.013G034900 [exp]	33.10	0.6945
AT1G55550			P-loop containing nucleoside t...		Potri.003G223800 [exp]	34.20	0.6934

Compare expression of checked genes

Potri.005G069200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.