Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07710 695 / 0 Ankyrin repeat family protein (.1) AT5G60070 632 / 0 ankyrin repeat family protein (.1) AT5G02620 560 / 0 ATANK1, ANK1 ankyrin-like1 (.1) AT2G31820 509 / 6e-175 Ankyrin repeat family protein (.1) AT1G05640 503 / 3e-173 Ankyrin repeat family protein (.1) AT3G12360 348 / 4e-113 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT2G01680 345 / 9e-113 Ankyrin repeat family protein (.1) AT3G09550 329 / 1e-105 Ankyrin repeat family protein (.1) AT1G34050 117 / 8e-28 Ankyrin repeat family protein (.1) AT5G54710 113 / 3e-26 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099600 [exp] 850 / 0 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069400 [exp] 793 / 0 AT1G07710 676 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 641 / 0 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 640 / 0 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 475 / 4e-162 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 473 / 8e-161 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 351 / 3e-115 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.008G134500 [exp] 343 / 4e-112 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 343 / 2e-111 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015224 [exp] 741 / 0 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 735 / 0 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 579 / 0 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 563 / 0 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 510 / 9e-176 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 401 / 3e-136 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10025287 [exp] 357 / 3e-120 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1) Lus10003308 [exp] 353 / 5e-115 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10023460 [exp] 343 / 2e-111 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 342 / 2e-110 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G069300.1 pacid=42803995 polypeptide=Potri.005G069300.1.p locus=Potri.005G069300 ID=Potri.005G069300.1.v4.1 annot-version=v4.1 ATGGAGTCACCAAATGGGCAGCCTAGTCCAATGCCCAGGAAAAAGATGACCAAACAGTTAACAGGAAAAAAAGACGACACGCCATTACATTCTGCAGCTA GAGCAGGAAATTTAGGTGCTGTAATGGAGATCCTAACTGGTACCGGAGAAGAAGAATTGAAGGAATTGTTAGAGAAGCAAAACCAATCAGGAGAAACTGC CCTTTATGTTGCTTCAGAATACGGTTATGTTGATGTGGTCAGAGAGATGATAAAGTACTATGATCTTGCTGATGCTGGTATCAAAGCAAGAAATGGATTT GATGCATTCCACGTTGCTGCCAAGCAAGGGGATATGGAGATATTGAGACTCCTAATGGAGGCCCATCCGGAATTGTCTATGACCGTTGATTTATCAAACA CCACAGCTCTGCACACGGCTGCCACAAAAGGGCATATAGAGATTGTGAATCTCTTATTAGACGCAGGGAGTAGCCTAGCAACCATTGCTAAAAGCAATGG AAAAACTGCCTTGCATTCTGCAGCTAGAAATGGACATGTAGAGGTTGTGAGAGCACTCCTAACAATGGAGCCTGGGATGGCAACAAGGACAGATAAAAAG GGGCAGACGGCATTTCACATGGCAGCGAAGGGACAAAATATTGAGATAGTGGAGGAGTTGATTGTTGCACAACCTTCATCTATAAACATGGTTGATACTA AGGGCAACACGGCCTTACATATAGCAACCAGGAAAGGCAGAATTCAGATTGTTAGGTTGCTACTTGGACATAGTGGAACCGACTTGAAGGCTGTGAATAG GACAAATGAAACAGCACTTGACACTGCTGAGAAAACAGGGCATTCAGAAATTGCAGCCATCTTGCAAGAACATGGGGTTCAAAGTGCCAAAACAATGCAG CCGCAGGAAAAGAATCCAGCACGAGAGCTGAAACAGACAGTAAGCGACATAAAACACGAAGTCTACTACCAACTAGAACACACACGTCAAACTAGAAAGC GTGTGCAAGGCATCGCTAAACGTCTTAACAAAATGCATGCTGAAGGTCTTAACAATGCCATCAACTCCACAACTGTTGTTGCCGTTCTTATTGCCACAGT TGCCTTCGCAGCCATATTCACCGTTCCCGGCGAATACGTAGATGACCCTGAAGAAATCCCCCCTGGACAGTCTCTAGGGGAAGCCAATATCGCACCGCAA GCTCCCTTTATCATCTTCTTTATCTTTGATTCCATCGCCCTCTTCATTTCCCTAGCTGTTGTGGTGGTGCAAACATCAGTTGTAGTCATTGAGAGCAAGG CAAAGAAGCAAATGATGGCGATCATAAACAAATTGATGTGGATAGCCTGTGCACTTATATCAGTTGCGTTCTTAGCACTATCTTTTATTGTTGTTGGCGA GCGAGAGAAATGGCTGGCAATTGGCGTGACAATCATAGGAGCAACTATAATGGTGACAACGCTGGGAACAATGTGTTACTGGGTTGTAAAACATCGGATT GAGGCCTCAAACATGAGGAGTATACGAAGATCATCACTTGGGAGCAGGTCACGCTCGTTTTCAGTTTCTGTGGTGTCCGATGCTGAGATCCTCAACAATG ACTATAAGAAAATGTATGCTATTTAA
AA sequence Show only first row Show all	>Potri.005G069300.1 pacid=42803995 polypeptide=Potri.005G069300.1.p locus=Potri.005G069300 ID=Potri.005G069300.1.v4.1 annot-version=v4.1 MESPNGQPSPMPRKKMTKQLTGKKDDTPLHSAARAGNLGAVMEILTGTGEEELKELLEKQNQSGETALYVASEYGYVDVVREMIKYYDLADAGIKARNGF DAFHVAAKQGDMEILRLLMEAHPELSMTVDLSNTTALHTAATKGHIEIVNLLLDAGSSLATIAKSNGKTALHSAARNGHVEVVRALLTMEPGMATRTDKK GQTAFHMAAKGQNIEIVEELIVAQPSSINMVDTKGNTALHIATRKGRIQIVRLLLGHSGTDLKAVNRTNETALDTAEKTGHSEIAAILQEHGVQSAKTMQ PQEKNPARELKQTVSDIKHEVYYQLEHTRQTRKRVQGIAKRLNKMHAEGLNNAINSTTVVAVLIATVAFAAIFTVPGEYVDDPEEIPPGQSLGEANIAPQ APFIIFFIFDSIALFISLAVVVVQTSVVVIESKAKKQMMAIINKLMWIACALISVAFLALSFIVVGEREKWLAIGVTIIGATIMVTTLGTMCYWVVKHRI EASNMRSIRRSSLGSRSRSFSVSVVSDAEILNNDYKKMYAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07710			Ankyrin repeat family protein ...		Potri.005G069300 [exp]	0	1
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Potri.009G020100 [exp]	10.67	0.7928
AT2G40435			unknown protein		Potri.016G132600 [exp]	11.74	0.7711
AT5G50130			NAD(P)-binding Rossmann-fold s...		Potri.012G087800 [exp]	15.23	0.7297
AT3G62270			HCO3- transporter family (.1)		Potri.008G100300 [exp]	18.73	0.7540
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Potri.004G075200 [exp]	19.87	0.7808	Pt-GAD.2
AT2G37195			unknown protein		Potri.006G127800 [exp]	21.16	0.7511
AT5G05390		LAC12	laccase 12 (.1)		Potri.008G073800 [exp]	25.41	0.7225	LAC90b
AT1G80120			Protein of unknown function (D...		Potri.006G113800 [exp]	26.22	0.7145
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.014G110400 [exp]	28.10	0.7593	GLP10.2
AT5G40440		ATMKK3	mitogen-activated protein kina...		Potri.001G345500 [exp]	35.32	0.6728

Compare expression of checked genes

Potri.005G069300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.