Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G07710 676 / 0 Ankyrin repeat family protein (.1) AT5G60070 641 / 0 ankyrin repeat family protein (.1) AT5G02620 572 / 0 ATANK1, ANK1 ankyrin-like1 (.1) AT1G05640 512 / 2e-176 Ankyrin repeat family protein (.1) AT2G31820 510 / 2e-175 Ankyrin repeat family protein (.1) AT2G01680 370 / 1e-122 Ankyrin repeat family protein (.1) AT3G12360 372 / 2e-122 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT3G09550 351 / 4e-114 Ankyrin repeat family protein (.1) AT5G54710 132 / 1e-32 Ankyrin repeat family protein (.1) AT1G34050 120 / 1e-28 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099600 [exp] 803 / 0 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 800 / 0 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.016G080700 [exp] 632 / 0 AT1G07710 570 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 625 / 0 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 481 / 3e-164 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 478 / 2e-163 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.010G106800 [exp] 366 / 5e-121 AT2G01680 778 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 364 / 1e-119 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 362 / 2e-118 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015224 [exp] 709 / 0 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 700 / 0 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 585 / 0 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 556 / 0 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 511 / 3e-176 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10027074 [exp] 409 / 3e-139 AT2G31820 626 / 0.0 Ankyrin repeat family protein (.1) Lus10025287 [exp] 388 / 3e-132 AT1G07710 403 / 2e-138 Ankyrin repeat family protein (.1) Lus10003308 [exp] 375 / 9e-124 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10021814 [exp] 360 / 4e-118 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 359 / 4e-118 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G069400.1 pacid=42804429 polypeptide=Potri.005G069400.1.p locus=Potri.005G069400 ID=Potri.005G069400.1.v4.1 annot-version=v4.1 ATGGAGTCATCTGGTGGCCAGCCCAGCTCAATGTCCCAGAAAAAGATGACCAGACAGTTGATAAGAAAAAAAGATGATACACCATTGCTTTTTGCAGCTA GAGCAGGAAATTTAGGTGCTGTAATGGAGATCCTAACTGGTACCGGAGAAGAAGAATTGAAGGAATTGTTAGAGAAGCAAAACCAATCAGGAGAAACTGC CCTTTATGTTGCCGTGGAATATGGTAATGTTGATGTTGTTAGAGAGATGATAAAGTATTATGATCTTGCTGGTGCTGGTATCAAAGCAAGAAATGGATTT GATGCATTTCACGTCGCTGCAAAACGAGGGGATTTAGAGATATTGAGAGTCCTAATGGAGGTCCATCCAGAATTGTCTATGACAGTTGACTTAACAAACA CTACAGCTTTGCACACGGCTGCAACACAAGGGCATATAGAGATTGTGAATTTTTTGTTGGATTCAGGCAGCAGCCTAGCAACCATTGCTAAAAGCAACGG AAAAACTGCCTTGCATTCTGCAGCTAGAAATGGACACTTGGAGGTTGTGAGAGCACTTTTGACAATAGAGCGTGGGATAGCGACAAGGAAAGATAAGAAG GGGCAGACGGCACTTCACATGGCAGTGAAGGGGCAGAACGTTGTAGTGGTGGAGGAGCTCATTCATGCAGAGCCTTCATCCATAAACATAGTTGATACTA AGGGCAACTCAGCCTTACATATAGCAACCAGGAAAGGAAGAGCTCAGATTGTTACACTGCTACTTCAGCATGGTGAAACTGACATGATGGCTGTTAATAG GACTGGTGAAACTGCTCTTGACACTGCAGAGAAAACTGGCCATCCCGAAATTCGAGTCATTTTGCGGGAGCATGGCTGCCAGAGTGCCAAAATTATTAAG CCACAAGAAAAAAACCCAGCGCGAGAGTTGAAACAAACAGTAAGTGACATAAAACATGAAGTCCACTACCAGCTAGAACACACACGTCAAACTACAAAGC ATGTGCAAGGTATCGCTAAATATGTCAACAAAATGCACGCAGAAGGGCTTAACAATGCCATCAACTCGACAACTGTAGTTGGTGTTCTCATTGCGACAGT TACCTTTGCAGCCATCTTCACTGTCCCTGGCCAATACGTGGACGACCCTTCAGAAATTCCACCTGGACAGTCTCTTGGAGAAGCAAACATCGCCACAAGA GCTCCATTCATCATATTCTTTATCTTTGATTCTATTGCGCTCTTCATTTCTTTGGCAGTTGTGGTGGTGCAGACATCAGTTGTAGTCATAGAGAACAAGG CAAAGAAGCAATTGATGGCAATTATAAACAAATTGATGTGGATAGCTTGTGCGCTTGTTTCGGTTGCATTTTTGGCACTGTCATATATTGTCGTGGGCGA GCATGAGAAATGGCTGGCTATCGGAGTGACAATTATAGGAGCAACTATAATGGTTACAACTTTGGGGACAATGTGTTACTGGGTTGTAAAACATCGGATT GAGTCCTCAAATATGAGAAGTATACGAAGATCATCTCTGGGTAGCAGGTCACGCTCGTTTTCAGTTTCTGTGATGTCAGACTCTGAGATTTTTGACAACG AACGTAATAAAATGTATGCTATTTAA
AA sequence Show only first row Show all	>Potri.005G069400.1 pacid=42804429 polypeptide=Potri.005G069400.1.p locus=Potri.005G069400 ID=Potri.005G069400.1.v4.1 annot-version=v4.1 MESSGGQPSSMSQKKMTRQLIRKKDDTPLLFAARAGNLGAVMEILTGTGEEELKELLEKQNQSGETALYVAVEYGNVDVVREMIKYYDLAGAGIKARNGF DAFHVAAKRGDLEILRVLMEVHPELSMTVDLTNTTALHTAATQGHIEIVNFLLDSGSSLATIAKSNGKTALHSAARNGHLEVVRALLTIERGIATRKDKK GQTALHMAVKGQNVVVVEELIHAEPSSINIVDTKGNSALHIATRKGRAQIVTLLLQHGETDMMAVNRTGETALDTAEKTGHPEIRVILREHGCQSAKIIK PQEKNPARELKQTVSDIKHEVHYQLEHTRQTTKHVQGIAKYVNKMHAEGLNNAINSTTVVGVLIATVTFAAIFTVPGQYVDDPSEIPPGQSLGEANIATR APFIIFFIFDSIALFISLAVVVVQTSVVVIENKAKKQLMAIINKLMWIACALVSVAFLALSYIVVGEHEKWLAIGVTIIGATIMVTTLGTMCYWVVKHRI ESSNMRSIRRSSLGSRSRSFSVSVMSDSEIFDNERNKMYAI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G07710			Ankyrin repeat family protein ...		Potri.005G069400 [exp]	0	1
AT3G62270			HCO3- transporter family (.1)		Potri.008G100300 [exp]	1.41	0.8440
AT4G34770			SAUR-like auxin-responsive pro...		Potri.004G165800 [exp]	3.60	0.7766
AT4G08850			Leucine-rich repeat receptor-l...		Potri.003G108200 [exp]	5.00	0.8039
AT5G55650			unknown protein		Potri.001G367100 [exp]	5.47	0.8253
AT3G42640		AHA8	H\(+\)-ATPase 8, H\(+\)-ATPase...		Potri.006G005900 [exp]	6.48	0.7623	Pt-AHA6.2
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.014G110400 [exp]	6.92	0.8150	GLP10.2
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Potri.012G055700 [exp]	8.12	0.7953
					Potri.008G164250 [exp]	9.94	0.7799
AT4G34040			RING/U-box superfamily protein...		Potri.007G045500 [exp]	10.58	0.7715
AT1G34670	MYB	ATMYB93	myb domain protein 93 (.1)		Potri.007G093900 [exp]	10.95	0.7745

Compare expression of checked genes

Potri.005G069400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.