Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01720 357 / 3e-124 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G08790 327 / 2e-112 NAC ATAF2, ANAC081 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G63790 315 / 2e-107 NAC ANAC102 NAC domain containing protein 102 (.1) AT1G77450 295 / 2e-100 NAC ANAC032 NAC domain containing protein 32 (.1) AT1G52890 227 / 6e-73 NAC ANAC019 NAC domain containing protein 19 (.1) AT3G15500 227 / 7e-73 NAC ATNAC3, ANAC055 NAC domain containing protein 55, NAC domain containing protein 3 (.1) AT4G27410 224 / 8e-72 NAC RD26, ANAC072 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) AT1G61110 224 / 1e-71 NAC ANAC025 NAC domain containing protein 25 (.1) AT3G04070 217 / 2e-68 NAC ANAC047 NAC domain containing protein 47 (.1.2) AT1G69490 213 / 4e-68 NAC NAP, ANAC029, ATNAP Arabidopsis NAC domain containing protein 29, NAC-like, activated by AP3/PI (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099400 [exp] 546 / 0 AT1G01720 366 / 6e-128 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G081000 [exp] 368 / 1e-128 AT1G01720 416 / 5e-148 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.005G180200 [exp] 362 / 2e-126 AT1G01720 392 / 9e-139 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.011G123300 [exp] 230 / 7e-74 AT4G27410 354 / 2e-122 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.004G038000 [exp] 231 / 8e-74 AT1G61110 332 / 3e-113 NAC domain containing protein 25 (.1) Potri.011G046700 [exp] 230 / 1e-73 AT1G61110 331 / 8e-113 NAC domain containing protein 25 (.1) Potri.001G404400 [exp] 229 / 3e-73 AT3G15510 345 / 1e-117 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Potri.001G404100 [exp] 229 / 4e-73 AT4G27410 370 / 8e-129 NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.2), NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.3) Potri.011G123500 [exp] 228 / 6e-73 AT3G15510 323 / 4e-109 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025690 [exp] 371 / 1e-129 AT1G01720 405 / 1e-143 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10018142 [exp] 366 / 1e-127 AT1G01720 401 / 7e-142 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10020883 [exp] 361 / 1e-125 AT5G08790 320 / 6e-110 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10033493 [exp] 357 / 7e-124 AT5G08790 315 / 4e-108 Arabidopsis NAC domain containing protein 81, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10042731 [exp] 355 / 1e-123 AT1G01720 414 / 7e-147 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Lus10032657 [exp] 235 / 6e-75 AT3G15510 353 / 1e-120 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10043095 [exp] 232 / 4e-74 AT3G15510 351 / 1e-119 NAC-REGULATED SEED MORPHOLOGY 1, Arabidopsis NAC domain containing protein 56, NAC domain containing protein 2 (.1) Lus10018469 [exp] 230 / 1e-73 AT1G61110 301 / 5e-101 NAC domain containing protein 25 (.1) Lus10011215 [exp] 229 / 5e-73 AT1G61110 305 / 1e-102 NAC domain containing protein 25 (.1) Lus10029692 [exp] 224 / 3e-72 AT1G01720 268 / 9e-90 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.005G069500.1 pacid=42802418 polypeptide=Potri.005G069500.1.p locus=Potri.005G069500 ID=Potri.005G069500.1.v4.1 annot-version=v4.1 ATGAAGGTAAATGGATCAGCAGCAGCAGATCAGTTGGAGTTACCAGCTGGATTTAGATTTCATCCAACAGATGATGAGTTGGTGAATCATTACTTGATTA AGAAATGTGGAGGCCAATCAATTTCTGTTCCTATTATTGCTGAGATTGATCTTTACAAGTATGATCCTTGGCAGCTTCCAGAAATGGCACTGTATGGTGA AAAGGAATGGTACTTCTTTTCTCCAAGGGATAGAAAATATCCAAACGGTTCAAGGCCGAACCGGGCGGCTGGAACCGGGTATTGGAAAGCAACCGGAGCA GATAAACCCATTGGTCGGCCCAAACCACTTGGCATAAAAAAAGCACTTGTATTTTACGCCGGCAAAGCTCCCAGAGGAATCAAAACCAATTGGATCATGC ACGAATACCGCCTTGCTAATGTTGATAGGTCTGCTGGCAAGAAAAATAACCTAAGGCTAGATGATTGGGTATTGTGCAGAATATACAACAAGAAAGGAAG CATAGAGAAGCATTTTCCTGCAGATAGAAAATCAATAACAAAGTATGCTGAAATGGAAGAGCAAAAGCCCAACATAAATGAAATGTCTGGTTACAAGAAT GGAGGGTCAACAATGGGAGCACCAACGATGATGATGAGTAATAGCAATGACTTGTTAAATATGGACACGTCCGATTCAACACCAAGGTTGCATACAGACT CAAGTTGTTCGGAGCAGGTGCTGTCACCTGAGCTCACTTGCGAGAGGGAGGTTCAGAGCCAGCCAAAATCATGGAATGATCAGCTAGATAGTGCATTTGA TTTCAACTTCAATTACATTGATGATGGCTTCCAAGACGACCCTTTTGCCTCACAAGTTCAGTTCCAAATGGACCAGCTCTCACCTCTGCAGGACATGTTC ATGTATTTACAGAGGCCGCTTTGA
AA sequence Show only first row Show all	>Potri.005G069500.1 pacid=42802418 polypeptide=Potri.005G069500.1.p locus=Potri.005G069500 ID=Potri.005G069500.1.v4.1 annot-version=v4.1 MKVNGSAAADQLELPAGFRFHPTDDELVNHYLIKKCGGQSISVPIIAEIDLYKYDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGA DKPIGRPKPLGIKKALVFYAGKAPRGIKTNWIMHEYRLANVDRSAGKKNNLRLDDWVLCRIYNKKGSIEKHFPADRKSITKYAEMEEQKPNINEMSGYKN GGSTMGAPTMMMSNSNDLLNMDTSDSTPRLHTDSSCSEQVLSPELTCEREVQSQPKSWNDQLDSAFDFNFNYIDDGFQDDPFASQVQFQMDQLSPLQDMF MYLQRPL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01720	NAC	ATAF1, ANAC002	Arabidopsis NAC domain contain...		Potri.005G069500 [exp]	0	1
AT3G16720		ATL2	TOXICOS EN LEVADURA 2 (.1)		Potri.008G219200 [exp]	2.23	0.8982	ATL2.3
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Potri.010G191300 [exp]	6.00	0.8907
AT1G16670			Protein kinase superfamily pro...		Potri.001G438400 [exp]	6.32	0.8942
AT5G39670			Calcium-binding EF-hand family...		Potri.004G122900 [exp]	8.24	0.8893
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	9.79	0.8752
AT5G57580			Calmodulin-binding protein (.1...		Potri.011G043300 [exp]	13.22	0.8745	CBP60.12
					Potri.018G078801 [exp]	16.91	0.8700
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.008G082100 [exp]	18.24	0.8716
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147000 [exp]	18.84	0.8809
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.004G117800 [exp]	18.97	0.8549

Compare expression of checked genes

Potri.005G069500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.