Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33490 530 / 0 Eukaryotic aspartyl protease family protein (.1.2) AT1G44130 402 / 3e-138 Eukaryotic aspartyl protease family protein (.1) AT1G77480 369 / 4e-125 Eukaryotic aspartyl protease family protein (.1.2) AT1G49050 268 / 1e-83 Eukaryotic aspartyl protease family protein (.1.2) AT1G65240 139 / 2e-36 Eukaryotic aspartyl protease family protein (.1) AT5G36260 134 / 1e-34 Eukaryotic aspartyl protease family protein (.1) AT3G02740 133 / 4e-34 Eukaryotic aspartyl protease family protein (.1) AT2G36670 132 / 9e-34 Eukaryotic aspartyl protease family protein (.1.2) AT5G43100 125 / 5e-31 Eukaryotic aspartyl protease family protein (.1) AT1G05840 119 / 2e-29 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099200 [exp] 718 / 0 AT4G33490 521 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.007G099301 [exp] 693 / 0 AT4G33490 503 / 6e-178 Eukaryotic aspartyl protease family protein (.1.2) Potri.005G179900 [exp] 401 / 9e-138 AT1G44130 501 / 2e-177 Eukaryotic aspartyl protease family protein (.1) Potri.002G081400 [exp] 388 / 3e-132 AT1G44130 449 / 1e-156 Eukaryotic aspartyl protease family protein (.1) Potri.015G053300 [exp] 291 / 6e-93 AT1G49050 611 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.019G054900 [exp] 144 / 4e-38 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 133 / 4e-34 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 122 / 2e-30 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.016G096700 [exp] 122 / 3e-30 AT2G36670 578 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033503 [exp] 548 / 0 AT4G33490 560 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10020874 [exp] 548 / 0 AT4G33490 563 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10025687 [exp] 396 / 1e-135 AT1G77480 463 / 5e-162 Eukaryotic aspartyl protease family protein (.1.2) Lus10018146 [exp] 393 / 3e-134 AT1G77480 460 / 1e-160 Eukaryotic aspartyl protease family protein (.1.2) Lus10042982 [exp] 275 / 1e-86 AT1G49050 569 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10032485 [exp] 218 / 3e-65 AT1G49050 475 / 6e-163 Eukaryotic aspartyl protease family protein (.1.2) Lus10018148 [exp] 196 / 3e-59 AT1G44130 227 / 2e-71 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 137 / 2e-35 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10027732 [exp] 134 / 1e-34 AT2G36670 634 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10035556 [exp] 132 / 7e-33 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14543 [poplar] [flax] TAXi_N Xylanase inhibitor N-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G069600.2 pacid=42803697 polypeptide=Potri.005G069600.2.p locus=Potri.005G069600 ID=Potri.005G069600.2.v4.1 annot-version=v4.1 ATGGGAAAAGAAAAGGATGGTTTTTGTGTGGTGGGGGTTTTAGTGCTATTTTTGTTTTTGGGGTCATCAGTTACTAGTGATGATAGCCCGAAAAGGTGGA GAAAGGCTATGATATCAGGTGAAACAATGGCTTCATCAATGTTGATCAATAGAGTTCCATCATCCATTGTGTTACCGCTTCATGGGAATGTCTATCCTAA TGGGTACTATAATGTGACTCTCAACATTGGCCAACCCTCAAAACCCTACTTTCTTGATGTAGATACTGGAAGTGACCTTACATGGCTCCAGTGTGATGCT CCCTGTGTCCAATGCACAGAGGCTCCTCATCCATATTACCGACCCCGTAACAATCTAGTACCTTGCATGGACCCCATTTGTCAATCCTTGCACTCTAACG GTGACCACAGATGTGAAAACCCAGGGCAGTGTGACTATGAGGTTGAGTATGCTGATGGTGGCTCATCCTTTGGCGTACTTGTGAGGGATACCTTTAATCT CAATTTTACAAGTGAAAAGCGTCATAGTCCTCTTCTGGCCCTTGGATGTGGATATGATCAGTTTCCAGGCGGATCTCATCATCCCATAGACGGAGTGCTT GGCCTTGGCAAGGGAAAGTCTAGCATTGTCTCACAGCTTAGTAGTCTGGGTTTGGTGAGAAATGTGATCGGCCACTGCTTAAGTGGGCATGGTGGAGGAT TCCTCTTCTTCGGGGATGATCTTTATGATTCGTCTCGTGTAGCTTGGACACCAATGTCACCTGATGCGAAACATTACTCTCCTGGACTCGCTGAATTAAC TTTTGATGGGAAAACTACCGGGTTCAAAAACCTGCTCACAACTTTTGACAGTGGGGCATCTTATACATACCTTAATTCTCAGGCATATCAAGGTCTAATT TCTCTGCTGAAGAAAGAATTATCCGGGAAACCTTTAAGAGAGGCATTGGATGATCAAACACTCCCACTTTGTTGGAAAGGCCGGAAACCTTTCAAAAGCA TACGTGATGTCAAGAAATACTTCAAGACCTTTGCATTGAGCTTCACGAATGAAAGGAAATCTAAAACTGAGCTTGAATTCCCACCAGAAGCTTACCTCAT AATATCATCCAAGGGAAATGCTTGCTTGGGAATTCTAAATGGCACAGAAGTAGGGCTGAATGATCTAAATGTCATTGGAGACATATCAATGCAAGACAGA GTGGTGATCTATGACAACGAGAAAGAACGGATTGGATGGGCCCCTGGAAATTGCAACAGGCTTCCTAAATCCAAAAGTTTCATCATTTGA
AA sequence Show only first row Show all	>Potri.005G069600.2 pacid=42803697 polypeptide=Potri.005G069600.2.p locus=Potri.005G069600 ID=Potri.005G069600.2.v4.1 annot-version=v4.1 MGKEKDGFCVVGVLVLFLFLGSSVTSDDSPKRWRKAMISGETMASSMLINRVPSSIVLPLHGNVYPNGYYNVTLNIGQPSKPYFLDVDTGSDLTWLQCDA PCVQCTEAPHPYYRPRNNLVPCMDPICQSLHSNGDHRCENPGQCDYEVEYADGGSSFGVLVRDTFNLNFTSEKRHSPLLALGCGYDQFPGGSHHPIDGVL GLGKGKSSIVSQLSSLGLVRNVIGHCLSGHGGGFLFFGDDLYDSSRVAWTPMSPDAKHYSPGLAELTFDGKTTGFKNLLTTFDSGASYTYLNSQAYQGLI SLLKKELSGKPLREALDDQTLPLCWKGRKPFKSIRDVKKYFKTFALSFTNERKSKTELEFPPEAYLIISSKGNACLGILNGTEVGLNDLNVIGDISMQDR VVIYDNEKERIGWAPGNCNRLPKSKSFII

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33490			Eukaryotic aspartyl protease f...		Potri.005G069600 [exp]	0	1
AT5G05280			RING/U-box superfamily protein...		Potri.019G130100 [exp]	6.92	0.9551
AT5G42310			Pentatricopeptide repeat (PPR-...		Potri.005G250200 [exp]	7.34	0.9559
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.004G014301 [exp]	9.16	0.9515
AT4G00370		PHT4;4, ANTR2	anion transporter 2, Major fac...		Potri.002G160650 [exp]	9.48	0.9465
AT2G22360			DNAJ heat shock family protein...		Potri.005G073900 [exp]	10.19	0.9571
AT1G49380			cytochrome c biogenesis protei...		Potri.009G111692 [exp]	11.40	0.9518
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.011G025200 [exp]	19.74	0.9340
AT5G50280		EMB1006	embryo defective 1006, Pentatr...		Potri.012G091800 [exp]	21.81	0.9378
AT2G48070		RPH1	resistance to phytophthora 1 (...		Potri.014G137300 [exp]	22.44	0.9518
AT1G61590			Protein kinase superfamily pro...		Potri.003G105400 [exp]	24.12	0.9010

Compare expression of checked genes

Potri.005G069600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.