Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08780 81 / 1e-15 winged-helix DNA-binding transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G087500 [exp] 50 / 2e-06 AT1G14900 91 / 1e-22 high mobility group A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003527 [exp] 92 / 2e-20 AT5G08780 54 / 3e-08 winged-helix DNA-binding transcription factor family protein (.1) Lus10002941 [exp] 97 / 3e-20 AT5G08780 51 / 2e-06 winged-helix DNA-binding transcription factor family protein (.1) Lus10003525 [exp] 84 / 3e-16 AT5G64740 912 / 0.0 PROCUSTE 1, ISOXABEN RESISTANT 2, cellulose synthase 6 (.1) Lus10024594 [exp] 51 / 4e-06 AT3G18035 132 / 3e-33 winged-helix DNA-binding transcription factor family protein (.1) Lus10032231 [exp] 48 / 5e-05 AT1G48620 103 / 2e-23 high mobility group A5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00538 [poplar] [flax] Linker_histone linker histone H1 and H5 family
Representative CDS sequence Show only first row Show all	>Potri.005G069700.2 pacid=42803710 polypeptide=Potri.005G069700.2.p locus=Potri.005G069700 ID=Potri.005G069700.2.v4.1 annot-version=v4.1 ATGGGGGTAACAGAGAATGCTTCTGCTCATGGACTAAAATTTGATGTGGATGACATGATTGTGAAAATGGCAAGCCAAGACCAAACCAAAATGCTGCACA TCAAACAGCAGCTGGCCACCATAGACCACACTCCAGATCACCCAGTATACCCTGTCATGGTGCATGAGGCAATTATGGATTTAAATGAAGAAGGGGGATC GACCAAGGATGCAATATCACAGTTTATCATGAGAAAGTATGATGTTTTTCAGGTTGTTCATGTGGCTAAACTAATTGAACAATTAGAGAAACTTGTGGAG AAGGAAGAAATAGTTTTTACATCTGAGAATCGTTACATGCTTCCAGCTGAGGACTCTGGTTCCCCTGCTAAGTTAAAGCAGGGAAAGAAGCAGTCGGTGC AATATGAACTGGATCGGAGAAGTAATAAGTTGCAAAAGGGAGTTCAAGTTCAAGAAGATCAGAATGCAATTATAGAAATAGAAGATCAACCTGAAAGTGA TAAAGCAAAAGAATCACAAGCAGCTCAAAGTGAAGGCGTTGAATACCGGAACCATTTACAAGAAGATCAGCTTAGGGTATATGAGGAAGAGAGGTTTGAG ATGACTACTGAGAATTTTTCTCAAGTTGTTGAAGGACAGTCAAAAGTGATTGTAGAAGATAGATACCAGCAACCTGCTGGAGTAGATGAGGGAAGACATG AAAAAGAAGTTCATATCCAAATGAGGGAAACTGAGGCAACTGAAGAGCGAAGTCAATTACAACAACAAGAACTCCAAGTGACTGAAGATCAAGTGGAAAC TGAACGTCAAAATAAAGTAACTGTAGACCTGCATCATGTTGAACGTCCTGAAAATGAAGAAATTATAGGCGAAATTCGACCTCAGGTTCCACAAGATATG TATGTTGACGAACATTATCAATCAGAGAAAACACATATTAGAACCATTCCTATGCAGATTGAAACACGAGGAAAAGAAGTTGGAGTGATTGGAGAGGAAA AGGGATTGCAAGAACAAGATAATAAAGTGGGGAACAATTCTACTGACATTAGCCATACATCGGAGGTTTCTGGACAACCTGTTCGAGATAAAGACATGAT AGCGATGCCAAGTTCTTCTCAGACAAGTCAACAATTAGACCATGTCGGATCTTCATTGTTATTTCATACTCTGAAGGAAAAGTGTATAAATGTGTGGAAG AAGTTAACAGAAGCTGAGCATGAGCTGATGGATGTTCTTAGCTGTTTGAATTCAATGGAAGCAATAGCCAATATTCATGAATCAGAGCCAAAAGCATTGC CACATTCTGATTATGTACCCAAAGATCCAATGCAACTTCAGCAGAATCAACAATTTGAGCTTCCTAAACTCAAAAGAACTGCAGAAGTTCAAATAACAGC ATTGCAGGAATCTTTTCATAACCAGAAAAGGCAGGCTTTACCTGGAAATCATGATTTCCCATCGAAATACTGGCCAGAAAACATTAGTGTTTCTCCTACT CAGCAAATCATGCACTCACAGCAACTGGAGGTGGAGAAACATCAAGATTTTCCTAGTTTTAAAGGCTATCTACAACTTCATGACCCAGAAAAGGGGTCCA AGTCTTGTTCATTTGCAGGTTCTTTGGAACCCCAGGAGCTGAATCTGGAGCAGAGATCAGAGCATCATGGCACAACTGTAGAGGACCTTCAGACTCCCGT CAATTTGGAGCATGTTGAACTGCGTGTTGAGCTGGAGCAGCGAGTAGATGTCCCTGAGCTAAAAAAGGCTTTGGGAAAAAACTTGTCTGCTGATGGAGAA TTGACACCTGCTGAGGACATCACTATAGATAGAGACGAGGTTGAGCCTGAGAGGCCTCCAGGATTTGAGGTTACGGTGGAGCGATTTTCCCAAGAACGGC TGCAGTGTGCTGTTCCTTGTGGCGATGCAAAGAAACTCGAGCCTGTGTCAATGCAGCTCGTGAAAGGGCAGAATCTTGAACTATCAGTCAAGGAAAGGCA TATAGAGGTTGAAACGATCACTTCAGAGCAACAATGCCAGATAAAACAGCAAATACAAGAGAAAGAATTACGCCCTCCGGAGCAAAGGGCATCCGAGAAC AAATCTGAATCAGGTGCAGCTGGAGCTACTTCTGATCAGCAACTCCATAACATTGAAATGCTTCAAGATCCAAAGCAAATTTTGGTGGTACATGAATCAT CCCGATTAACGAATCAGCAAAAGAAGGGTCGTGGCAAGAGAAAGAAAGTAGAAATGGAGCTGCCCCGGAGGGAACTATGGTATCGTGGCACAAAGGCATG TGAATCCAATCCAGCACATCCAACAGATGCAAATGATGTTGATTCCGACAGACAGCGGAAACTAGATCATCCAATCCCTGAAAGACCTCAAAAGAGAAAA CCAAAGAAAGTGGAGAAATCATCTCAATCAGTGGAGCAGGAACTCAAAGATCAGGGTAGGAAAGGGCTTCTCAGATCTCAGCTTGCACCAGTAACATCTG ATGAAGTCAAAATGCTAGAAAATCCAAAACAGCACAAACTAACATCAGCAGGGGATTCTATTCAAACTCAGCAGAAACAGCAACTACAGTTTCGAGTGCA ATGCTCTTCCCAAGCTGAAGAGATTATGGATAAAATAATGGAAGAATCACAACCCTTACCAGACCAAAATAAACAGGGAAGTCAACTGGCATATCAACTT CGAGGGAGGCGTCCTAAGCTAAAGCCTGTTATGGATACAGCTAAGGGGAAATTTTTACCTGTAGATGGTGAAGATCATCACAAGGAGCTGCCATTGCATA TTCAAGGGCAAAGGCCTAAAGCCATGACCAGTACAAAACTCATAGTAAGAGAAATATCCTCAAGCCATCAGAGTCACAATGAGCAACAGCCCAAGAAACG TGGCCCAGGAAGGCCACCTAAATCATTATCAGCTGCATCTCAAACTGTCAACGTACCATTGTCTCCACAGATTCAGCTTAAGCAGAAAAGGCAGCAACAT GATCTTCAGAAAAAGCAAAAATGGCCAATTGGTGCTGGTCAAGGGAGGTTTACAAGATCCAAATCACCATCAGTTGCAGAAACCATTTCATCATGA
AA sequence Show only first row Show all	>Potri.005G069700.2 pacid=42803710 polypeptide=Potri.005G069700.2.p locus=Potri.005G069700 ID=Potri.005G069700.2.v4.1 annot-version=v4.1 MGVTENASAHGLKFDVDDMIVKMASQDQTKMLHIKQQLATIDHTPDHPVYPVMVHEAIMDLNEEGGSTKDAISQFIMRKYDVFQVVHVAKLIEQLEKLVE KEEIVFTSENRYMLPAEDSGSPAKLKQGKKQSVQYELDRRSNKLQKGVQVQEDQNAIIEIEDQPESDKAKESQAAQSEGVEYRNHLQEDQLRVYEEERFE MTTENFSQVVEGQSKVIVEDRYQQPAGVDEGRHEKEVHIQMRETEATEERSQLQQQELQVTEDQVETERQNKVTVDLHHVERPENEEIIGEIRPQVPQDM YVDEHYQSEKTHIRTIPMQIETRGKEVGVIGEEKGLQEQDNKVGNNSTDISHTSEVSGQPVRDKDMIAMPSSSQTSQQLDHVGSSLLFHTLKEKCINVWK KLTEAEHELMDVLSCLNSMEAIANIHESEPKALPHSDYVPKDPMQLQQNQQFELPKLKRTAEVQITALQESFHNQKRQALPGNHDFPSKYWPENISVSPT QQIMHSQQLEVEKHQDFPSFKGYLQLHDPEKGSKSCSFAGSLEPQELNLEQRSEHHGTTVEDLQTPVNLEHVELRVELEQRVDVPELKKALGKNLSADGE LTPAEDITIDRDEVEPERPPGFEVTVERFSQERLQCAVPCGDAKKLEPVSMQLVKGQNLELSVKERHIEVETITSEQQCQIKQQIQEKELRPPEQRASEN KSESGAAGATSDQQLHNIEMLQDPKQILVVHESSRLTNQQKKGRGKRKKVEMELPRRELWYRGTKACESNPAHPTDANDVDSDRQRKLDHPIPERPQKRK PKKVEKSSQSVEQELKDQGRKGLLRSQLAPVTSDEVKMLENPKQHKLTSAGDSIQTQQKQQLQFRVQCSSQAEEIMDKIMEESQPLPDQNKQGSQLAYQL RGRRPKLKPVMDTAKGKFLPVDGEDHHKELPLHIQGQRPKAMTSTKLIVREISSSHQSHNEQQPKKRGPGRPPKSLSAASQTVNVPLSPQIQLKQKRQQH DLQKKQKWPIGAGQGRFTRSKSPSVAETISS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08780			winged-helix DNA-binding trans...		Potri.005G069700 [exp]	0	1
AT4G02425			unknown protein		Potri.002G204700 [exp]	1.41	0.7536
AT3G26390			unknown protein		Potri.006G180700 [exp]	3.87	0.6919
AT1G27090			glycine-rich protein (.1)		Potri.008G194200 [exp]	5.65	0.7257
AT2G21630			Sec23/Sec24 protein transport ...		Potri.002G238500 [exp]	5.83	0.7570
AT5G05800			unknown protein		Potri.004G230401 [exp]	5.83	0.6864
AT5G17580			Phototropic-responsive NPH3 fa...		Potri.013G073700 [exp]	7.74	0.6340
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.013G034300 [exp]	7.93	0.7213
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.018G137400 [exp]	16.52	0.6549
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	18.97	0.6764
AT1G65660		SMP1	SWELLMAP 1, Pre-mRNA splicing ...		Potri.015G048200 [exp]	19.23	0.7162

Compare expression of checked genes

Potri.005G069700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.