Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08750 414 / 1e-144 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT5G63780 405 / 5e-141 SHA1 shoot apical meristem arrest 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 62 / 3e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G37950 57 / 2e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 56 / 5e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 55 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT3G06330 55 / 4e-08 RING/U-box superfamily protein (.1.2.3) AT2G45530 54 / 5e-08 RING/U-box superfamily protein (.1) AT5G01070 50 / 5e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G60580 50 / 2e-06 RING/U-box superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098900 [exp] 616 / 0 AT5G08750 411 / 2e-143 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.010G195100 [exp] 59 / 3e-10 AT5G05830 206 / 9e-68 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G149200 [exp] 60 / 5e-10 AT2G45530 236 / 3e-78 RING/U-box superfamily protein (.1) Potri.004G059200 [exp] 58 / 5e-09 AT5G05830 107 / 3e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.008G062600 [exp] 56 / 6e-09 AT5G05830 211 / 7e-70 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.011G068800 [exp] 56 / 1e-08 AT5G05830 91 / 4e-21 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.001G246700 [exp] 53 / 3e-08 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 54 / 4e-08 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.009G039700 [exp] 53 / 4e-08 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035549 [exp] 58 / 2e-09 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 57 / 2e-09 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10028249 [exp] 57 / 3e-09 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 56 / 4e-09 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 57 / 5e-09 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 56 / 5e-09 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 56 / 2e-08 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10007293 [exp] 55 / 2e-08 AT2G34200 103 / 6e-27 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10021113 [exp] 54 / 3e-08 AT5G05830 167 / 7e-53 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10008286 [exp] 54 / 7e-08 AT2G45530 258 / 1e-86 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.005G070100.1 pacid=42803935 polypeptide=Potri.005G070100.1.p locus=Potri.005G070100 ID=Potri.005G070100.1.v4.1 annot-version=v4.1 ATGATGAGTAAGGAAAATGTATCACAACCAATCAGCAGTGGAGTCAGGAATGATGGTCACTCACCTAGTGAGAGTGAAGATTTAGGGACTGGCTCACGTT GCAGTCTAGATGCAGGTATAGCAACTTGTCGTGTGTGCCAATGTGCTGAATCTGACAAAAGGGGAGATGTTGCTTTGGGGTTTTTGGGCATTGTCCCTCC ATTGCAAGAAGCACGCAAAAGTAGTGGTGCAGTAAAACCTGAAAGCAAAGAAGTCCCCTTGAATGCTGAAGCTGATCGGTTCCATAGCAAAAATACTGGA AGAGAATCGGGGCTGGTTGAGTTCTTTAGCCCTGAAGGGGAGGTTTTCATTTGTAATACAGATACAGATTTAGAATTGGGTTCATGCCACCAACAAGACT TGTTAATTGAACTTGGCTGCTCTTGCAAAAGTGATCTTGCCCTGGTACACTATGCATGTGCTCTCAAGTGGTTTGTCAATCATGGATCCACTGTCTGTGA AATCTGTGGACATGTTGCAATAAATATCAGGACTTCAGACTTTAAAAAGGTTATGGTTGCTTTGAAGGATTATGAAGCATTGAGGGAAAGGACTGCCACT GGAGACCCTAATCCTGCTCAGGTGCATGCCAGTGCAGGTGTTGATCCTGATGCTGTTGCTGCTGTTAGAAGGCAACGGCTAAGTGAAATTTCGTTGTGGT TTTGTCCCCACAATAATAACACCAATAATTATAATAATAATTCTGCTGCAGTTTCACAGGTTGTTTCTGAACAACCCCTGAATACTGTCACAGAAGATAT TGTCCCTGCTGATAATCGTGCAACTAAATGGGCTGTGGAAGGTACAGGGATTTTGCTTGCAACAGGGCTACTCACTGTTACTCTAGCATGGCTTATTGCT CCCCGTGTTGGAAAGAAAACTGCCAAAAGTGGTCTTCATATTCTCCTTGGAGGCATTTGTGCTCTAACAGTTGTGATCTTCTTTCGCTTTATTGTGCTCA CCAGAATCAAATATGGACCTGCTCGCTACTGGGCTATCTTATTTGTCTTCTGGTTTCTTGTGTTTGGTATATGGGCGTCACGGACACATGATGCTCATAC TACATAG
AA sequence Show only first row Show all	>Potri.005G070100.1 pacid=42803935 polypeptide=Potri.005G070100.1.p locus=Potri.005G070100 ID=Potri.005G070100.1.v4.1 annot-version=v4.1 MMSKENVSQPISSGVRNDGHSPSESEDLGTGSRCSLDAGIATCRVCQCAESDKRGDVALGFLGIVPPLQEARKSSGAVKPESKEVPLNAEADRFHSKNTG RESGLVEFFSPEGEVFICNTDTDLELGSCHQQDLLIELGCSCKSDLALVHYACALKWFVNHGSTVCEICGHVAINIRTSDFKKVMVALKDYEALRERTAT GDPNPAQVHASAGVDPDAVAAVRRQRLSEISLWFCPHNNNTNNYNNNSAAVSQVVSEQPLNTVTEDIVPADNRATKWAVEGTGILLATGLLTVTLAWLIA PRVGKKTAKSGLHILLGGICALTVVIFFRFIVLTRIKYGPARYWAILFVFWFLVFGIWASRTHDAHTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08750			RING/FYVE/PHD zinc finger supe...		Potri.005G070100 [exp]	0	1
AT5G11730			Core-2/I-branching beta-1,6-N-...		Potri.006G233400 [exp]	5.29	0.6762
AT3G28970		AAR3	antiauxin-resistant 3, Domain ...		Potri.004G122100 [exp]	9.21	0.7279
AT1G12450			SNARE associated Golgi protein...		Potri.001G114600 [exp]	9.48	0.6868
AT5G54940			Translation initiation factor ...		Potri.010G151700 [exp]	10.95	0.6546
AT1G30500	CCAAT	NF-YA7	"nuclear factor Y, subunit A7"...		Potri.001G372100 [exp]	18.33	0.6456
AT4G16695			unknown protein		Potri.003G078100 [exp]	18.38	0.6045
AT2G23780			RING/U-box superfamily protein...		Potri.007G031600 [exp]	21.00	0.5794
AT2G26800			Aldolase superfamily protein (...		Potri.009G068600 [exp]	26.11	0.6282
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054600 [exp]	27.92	0.6278	HSP70.4
AT3G56130			biotin/lipoyl attachment domai...		Potri.010G183200 [exp]	29.66	0.5837

Compare expression of checked genes

Potri.005G070100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.