Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21740 316 / 1e-94 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 301 / 2e-89 Protein of unknown function (DUF630 and DUF632) (.1) AT2G17110 253 / 4e-73 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 244 / 4e-69 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT5G54480 221 / 1e-61 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 148 / 7e-37 Protein of unknown function (DUF630 and DUF632) (.1) AT1G20530 144 / 8e-36 Protein of unknown function (DUF630 and DUF632) (.1) AT4G39790 138 / 1e-33 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 132 / 1e-31 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G02110 118 / 2e-27 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G179100 [exp] 348 / 6e-107 AT1G21740 617 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G082000 [exp] 337 / 1e-102 AT1G21740 644 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.004G182900 [exp] 256 / 1e-73 AT4G35240 639 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.009G142900 [exp] 252 / 5e-72 AT4G35240 621 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.005G249400 [exp] 205 / 1e-56 AT1G20530 359 / 9e-116 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G011700 [exp] 188 / 1e-50 AT4G35240 348 / 5e-109 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Potri.004G177200 [exp] 172 / 7e-45 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 166 / 1e-42 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G090300 [exp] 166 / 1e-42 AT4G39790 556 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042722 [exp] 340 / 3e-106 AT1G21740 659 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10029683 [exp] 334 / 1e-102 AT1G21740 696 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10023949 [exp] 276 / 1e-82 AT4G35240 655 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10014445 [exp] 276 / 6e-81 AT4G35240 712 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10025077 [exp] 163 / 2e-41 AT4G35240 237 / 3e-66 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10024007 [exp] 160 / 9e-41 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041710 [exp] 157 / 1e-39 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025550 [exp] 150 / 3e-37 AT2G27090 768 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10026763 [exp] 146 / 4e-36 AT2G27090 713 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024039 [exp] 144 / 1e-35 AT4G39790 645 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Potri.005G070200.1 pacid=42804934 polypeptide=Potri.005G070200.1.p locus=Potri.005G070200 ID=Potri.005G070200.1.v4.1 annot-version=v4.1 ATGGGTGTTGGAATGTCTAAGGTGGATAGGTTAGAGCTGGTGAGTCTTTGTAAAGAAAGGAAGGAATTGATTAAGGCTGCTGTTGATTGTCGTTATGAAT TAATTTCAGCTCACATTATGTATGTGCAATCTTTTTTAGACATGGGAAATGCGCTTCATCGATTTTTAGAGGAAGATTTAGAGATTATTTCTGATTTCTC TTGTGATTGCTCTGATGAGGATTCGCATTTGAAATTTTCTTCCTCAGGTTTGGAGTCAGTAACTGATTCTGTTAATGAACACTTGCATTTTTCAGGAGAG TCTTCTGGGTCAGAGAAAGATTTTCAAGCAGGGGCGAATTCAAGTGGACATATGGGAAATATGTCTTCTAGTGTTCCTGCTGATTCCAGACATAGATACC CTGATCTTGACAATGACGATGTATATGTTCCAATTGTTGATATGAGGTATCCTCAAGAAAACAAAAAAGTTCCTTTGGATGCTACAATGGATACTACGAA AAACAATGTCACATATGCTCCTAATGGAAATTGGGAATCTGCTAAAAATCCAATGGACTTTCCGTATTATTATGAGTTTTGGTCCCCTCCTGTCCATGCT GCTAATCCTGAAGAAGAGAGCGCTCCTGCTGCCACCTCTTCTCCTGAACCTGCAGGTTTTGCTTGGAGATTCAATCCATTTAACACCGAGGTTGACGATG TCTATCATTACTATAATTACTATTCTCAGGAGAATATAATTGGTGACAGAGCTGAGAGTGATGATTCTGAAGTAAGAAAAACCAGGGAGAAAGAGGGGAT CCCTGATTTGGAAGATGATACTGATCAAAGTATATTAAGGAAAAAAAGATACAAGAAGAAATCATCAGAGAAAGATACAAGTGGAGACACCGGTGCTGAC CCAAAGAATTATGATCACGTACAGTCAGAACAAGAAAAGGAATCTAAAAACACGCCTGACACTGTTGAAGAAAATGCCATGGCATGTTCCATCTCCCGTG GATTGATCAAAATAGAACAAGAGAAAGCAATGGAGGAAGGTGAGAGTTCAGAGGAGGCCCGGTCATTCACCTGCAATGGTGAATGTCCCGAAACAGATAT CCATAGTCCATGGGGTCTTCAGCAAGCAGTAAATGAAATCAAGAATGCATTTGAGACTTCTTTCAACTATGGACAAGAGGTTTCCATATTGCTTGAGGCA GGCAAGCTGCCTTATCAGACTACGGGTGCCAAATTTAAAGTATTTGCCTCTCGGCTTGTAAGTTTGGCAGTTCCTTTTGCAATGTCTTCACAGCACCCAG CTTTTGTTCACTCAAGTAGATCTGCTGCCAAGAAAATGAAGTCAGCCAAAGTTGTGTGTGAAAATTATAAGGATGTTGATAGAAAATCCGATCACCTGTC ATCCACTTTGGAGAAGCTGCATGTATGGGAGAAGAAAATCTACGAGGAGGTTAAGCTTGAGGAAAAACTCCGTGTTTCTTATGATAAAGAGTGGAGGAGG CTAAAAAGGCTAGATGATAGAGGTGCCGAGTCCAGTCAGATTGATAGGACACAAGCTTCTGTCAAAAGTCTGCTTTCAAAAATTAAAGTTCCTGTCAGTG CAATTGAGGCAATATCGATCAGGATTCACAAAATAAGAGATGAAGAGCTGCAAGCCCAAGTGAATGAATTGATTATCGGATTGTCAAGAATGTGGAAGCT CATAATCAAGTGCCACAAAAAGCAATTACAAGCTATTAAAAATGCTGAAACATATGTGCATATAGCTGGGATGCACACCCGCAAAGGTTCACGCTTAAAG GCTACTAAAAACCTAGAGAAAGAAACTTGGAAATGGGCTGCACGCTTTAGTCACTATATTAAAACCCAGAAAGCTTTTGTGTCATTGTTGAACAATTGGC TTCTGGGGTACATATCTGAGGAGTTGAAAACTCTAGATGAAGCTGATCGATTGTCTCCAAACCGGATAGGAGCTCCTGCCATTTTCATTGTTTGTAATGA TTGGCACAACGCAATTCAGGATATTTCAGAAGATGGAGTGTACAAGGCCATTCATGGTTTTGCCTCGAGCTTACACCATTTACAGGAGAAGCGAGAAGAA GAACACCGACAGAGAATTAAAACTGAACAACTTTTGAAGGATTTAGAGGATCAATTTGAGAAAGATGTTATAGTCGCGATGCAGGAGATGTTAGATGAAC AAAAAGCGACACATCAAGAAGCTATTAAACTAGCCAATGATGCTGCCTCAGATTGCTTGAGAATTAGTCTGCCTCCTGTTTTTGAGACTTTAGAGAGCTT CTGTCTGGAGAATTTGAAAGCTTATGAGAAAATCAGAATACCAAATGCAAGTACAAGCAGATAA
AA sequence Show only first row Show all	>Potri.005G070200.1 pacid=42804934 polypeptide=Potri.005G070200.1.p locus=Potri.005G070200 ID=Potri.005G070200.1.v4.1 annot-version=v4.1 MGVGMSKVDRLELVSLCKERKELIKAAVDCRYELISAHIMYVQSFLDMGNALHRFLEEDLEIISDFSCDCSDEDSHLKFSSSGLESVTDSVNEHLHFSGE SSGSEKDFQAGANSSGHMGNMSSSVPADSRHRYPDLDNDDVYVPIVDMRYPQENKKVPLDATMDTTKNNVTYAPNGNWESAKNPMDFPYYYEFWSPPVHA ANPEEESAPAATSSPEPAGFAWRFNPFNTEVDDVYHYYNYYSQENIIGDRAESDDSEVRKTREKEGIPDLEDDTDQSILRKKRYKKKSSEKDTSGDTGAD PKNYDHVQSEQEKESKNTPDTVEENAMACSISRGLIKIEQEKAMEEGESSEEARSFTCNGECPETDIHSPWGLQQAVNEIKNAFETSFNYGQEVSILLEA GKLPYQTTGAKFKVFASRLVSLAVPFAMSSQHPAFVHSSRSAAKKMKSAKVVCENYKDVDRKSDHLSSTLEKLHVWEKKIYEEVKLEEKLRVSYDKEWRR LKRLDDRGAESSQIDRTQASVKSLLSKIKVPVSAIEAISIRIHKIRDEELQAQVNELIIGLSRMWKLIIKCHKKQLQAIKNAETYVHIAGMHTRKGSRLK ATKNLEKETWKWAARFSHYIKTQKAFVSLLNNWLLGYISEELKTLDEADRLSPNRIGAPAIFIVCNDWHNAIQDISEDGVYKAIHGFASSLHHLQEKREE EHRQRIKTEQLLKDLEDQFEKDVIVAMQEMLDEQKATHQEAIKLANDAASDCLRISLPPVFETLESFCLENLKAYEKIRIPNASTSR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21740			Protein of unknown function (D...		Potri.005G070200 [exp]	0	1
AT5G06810			Mitochondrial transcription te...		Potri.016G048300 [exp]	3.87	0.8344
AT5G07900			Mitochondrial transcription te...		Potri.001G034500 [exp]	6.32	0.8500
AT5G17900			microfibrillar-associated prot...		Potri.013G065600 [exp]	10.00	0.8490
AT5G23340			RNI-like superfamily protein (...		Potri.007G075600 [exp]	10.95	0.8432
AT3G42170			BED zinc finger ;hAT family di...		Potri.004G126740 [exp]	12.36	0.8456
AT2G17030			F-box family protein with a do...		Potri.002G014500 [exp]	18.57	0.7933
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.013G149800 [exp]	20.00	0.8065
AT1G40390			DNAse I-like superfamily prote...		Potri.003G024501 [exp]	21.42	0.8179
AT3G09360			Cyclin/Brf1-like TBP-binding p...		Potri.001G246100 [exp]	21.49	0.8232
AT1G78540		STATLB, ATSHB	STAT-TYPE LINKER-SH2 DOMAIN FA...		Potri.008G139800 [exp]	22.00	0.7961

Compare expression of checked genes

Potri.005G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.