Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64440 488 / 1e-166 ATFAAH fatty acid amide hydrolase (.1) AT3G25660 161 / 1e-42 Amidase family protein (.1) AT5G09420 91 / 4e-19 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT5G07360 86 / 3e-17 Amidase family protein (.1.2) AT1G08980 82 / 2e-16 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT3G17970 79 / 5e-15 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT4G34880 78 / 5e-15 Amidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098600 [exp] 1104 / 0 AT5G64440 478 / 2e-162 fatty acid amide hydrolase (.1) Potri.001G285900 [exp] 453 / 7e-153 AT5G64440 769 / 0.0 fatty acid amide hydrolase (.1) Potri.018G086350 [exp] 158 / 1e-41 AT3G25660 766 / 0.0 Amidase family protein (.1) Potri.004G171300 [exp] 115 / 3e-27 AT4G34880 473 / 5e-164 Amidase family protein (.1) Potri.009G130500 [exp] 107 / 3e-24 AT4G34880 500 / 2e-174 Amidase family protein (.1) Potri.004G169300 [exp] 103 / 6e-23 AT4G34880 493 / 7e-172 Amidase family protein (.1) Potri.009G130700 [exp] 98 / 2e-21 AT4G34880 528 / 0.0 Amidase family protein (.1) Potri.015G109400 [exp] 93 / 1e-19 AT5G07360 823 / 0.0 Amidase family protein (.1.2) Potri.013G024200 [exp] 90 / 7e-19 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016685 [exp] 778 / 0 AT5G64440 453 / 2e-152 fatty acid amide hydrolase (.1) Lus10020468 [exp] 449 / 3e-151 AT5G64440 781 / 0.0 fatty acid amide hydrolase (.1) Lus10007094 [exp] 436 / 5e-146 AT5G64440 795 / 0.0 fatty acid amide hydrolase (.1) Lus10007095 [exp] 434 / 5e-144 AT5G64440 776 / 0.0 fatty acid amide hydrolase (.1) Lus10007361 [exp] 152 / 2e-39 AT3G25660 795 / 0.0 Amidase family protein (.1) Lus10020781 [exp] 150 / 3e-38 AT3G25660 780 / 0.0 Amidase family protein (.1) Lus10020469 [exp] 108 / 2e-26 AT5G64440 163 / 2e-46 fatty acid amide hydrolase (.1) Lus10002805 [exp] 109 / 3e-25 AT4G34880 454 / 3e-158 Amidase family protein (.1) Lus10027852 [exp] 102 / 1e-22 AT4G34880 489 / 3e-170 Amidase family protein (.1) Lus10025066 [exp] 97 / 5e-21 AT4G34880 484 / 3e-168 Amidase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [poplar] [flax] Amidase Amidase
Representative CDS sequence Show only first row Show all	>Potri.005G070300.1 pacid=42804803 polypeptide=Potri.005G070300.1.p locus=Potri.005G070300 ID=Potri.005G070300.1.v4.1 annot-version=v4.1 ATGGGATTGTTCAGAGCTAAAGGTGTGGTCTACAAGCCTGTGGAGAATGTTAATCTTGGCCCTGACAGTGATGAATTCTATCTGCAAGCCAATGTCAAAG CTCCTCGCATGGCTGGATTTCCTGTCAAGATTTTCGCCTGGTTTCTCGAGTCGCGGATTTTTGGAACATTCCTGCTGTACATTTTGAAGAGAAACAATCT GATTCACAAGCTAGTTACAAATGCAGAACTGAAGGAATCGCCTGTGTACGTCCCTATGCATCCATTTGAAGAGCTCAATGAACAAGAAGTCAAGCACATA GATTCTGGTCTATCACCGTCTGAGCAAGTTCAGCAGGCAATTAACTGTCTGCCTCTGCCTTCAGAGAAAATTGTAAATGGATTGAAGCCATCTTTCCGTC GCTGGACAATAATGGATTATTCTAAAGCCTACAGCTCAGGAGAAATAACTCCATGCATGGTTGCAGAACAATTAGTAACTGCCATCCGTGAATCTTCCAG TCCTCCAATGGACATGGCATTTTTTATTAATTATGATGCTGAAGATATTTTAAGGCAGGCTAAAGAATCAACTCGTCGGTATGAAAGAGGGGAGCCAATA TCAGCTCTAGATGGAGTTCCAATTGCAATAAAGGATGAAATAGACTGTAGCCCTTATCCGACAACAGGTGGGACAAAGTGGTTGCACAAATTCAGATCTT GTAAAGGTGATGCTTGCTGTGTTATGCGTCTCAGATCATGTGGTGCTGTAATTATTGGAAAAACCAATATGCATGAGCTTGGAGCTGGAACAAGTGGAAT AAATCCTCACTATGGGGCTACTAGAAATCCATACAATCCTGGCATGATCTCTGGAGGTTCATCTAGCGGATCAGCTGCTGTGGTAGCTGCAGGACTTTGC CCTGTTGCCCTTGGTGTTGATGGGGGAGGATCCGTGAGAATGCCTGCAGCTCTTTGTGGTGTTGTTGGTTTCAAACCAACTTTCGGGCGTGTACCTCACT CTGGTGTTCTTCCTCTGAACTGGACAGTTGGGATGGTAGGAGTATTAGCAGGCACGATAGAGGATGCGTTTATAGTTTATGCAGCTATAAATGGCCCACT TCCTTCCCATGAAACCTCTGCTATACCGCTGCCAAAGGTATACTTCCCACTGCTGCAATCAACAAATTCAGTGTCAAACGTCATATTGGCAAGATATGGG GAGTGGTTTAGTGATTGCGGTGATGATATTAGAACATGTTGTTCCCAAGCATTGCACCAGCTTTCTGAGAAGTTTGGGTGGAAGACTGTAGATGTTACCA TACCAGACATAGAATCAATGCGCCTCGCACATTACTTAACAATCGGATCTGAGTGCACTGCTGCACTTAGTTCTTATCTAGAGAAGTTGGATAATGCAGA ATCAGGATGGGATTTAAGGGTAGCACTTTGTGTATATGGTTCTTTCAGTGGTGAAGAGTATATAAAGGCTCAGAAACTCAGGAGCCGGCAGATGCAATTT CACAGGAATATATTTACAAAAGCAGATGTCATTGTCACACCGACAGTAGGCGTAACTGCATACCCAATTTTCGATGATGCTCTCAAGACTGGTGAGCTGG ACTACATTAATGGAGCTGCACTAGTTCGGTATCAGATAGCAGGAAATTTTCTGGGATTGCCAGCAGTTACCGTTCCAGTTGGATATGACAAAAATGGGTT GCCTATCGGCCTCCAATTTATCGGAAGGCCATGGTCAGAACCAACATTGATCCATATAGCATATGCTATGCAGACTCTCTGCGTTTCAAAGTACAGAAAA CCACAGGTTTTCTATGATTTGCTCGAGAAAGATTAA
AA sequence Show only first row Show all	>Potri.005G070300.1 pacid=42804803 polypeptide=Potri.005G070300.1.p locus=Potri.005G070300 ID=Potri.005G070300.1.v4.1 annot-version=v4.1 MGLFRAKGVVYKPVENVNLGPDSDEFYLQANVKAPRMAGFPVKIFAWFLESRIFGTFLLYILKRNNLIHKLVTNAELKESPVYVPMHPFEELNEQEVKHI DSGLSPSEQVQQAINCLPLPSEKIVNGLKPSFRRWTIMDYSKAYSSGEITPCMVAEQLVTAIRESSSPPMDMAFFINYDAEDILRQAKESTRRYERGEPI SALDGVPIAIKDEIDCSPYPTTGGTKWLHKFRSCKGDACCVMRLRSCGAVIIGKTNMHELGAGTSGINPHYGATRNPYNPGMISGGSSSGSAAVVAAGLC PVALGVDGGGSVRMPAALCGVVGFKPTFGRVPHSGVLPLNWTVGMVGVLAGTIEDAFIVYAAINGPLPSHETSAIPLPKVYFPLLQSTNSVSNVILARYG EWFSDCGDDIRTCCSQALHQLSEKFGWKTVDVTIPDIESMRLAHYLTIGSECTAALSSYLEKLDNAESGWDLRVALCVYGSFSGEEYIKAQKLRSRQMQF HRNIFTKADVIVTPTVGVTAYPIFDDALKTGELDYINGAALVRYQIAGNFLGLPAVTVPVGYDKNGLPIGLQFIGRPWSEPTLIHIAYAMQTLCVSKYRK PQVFYDLLEKD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Potri.005G070300 [exp]	0	1
AT5G67090			Subtilisin-like serine endopep...		Potri.002G124500 [exp]	1.41	0.9094
AT1G30700			FAD-binding Berberine family p...		Potri.011G158300 [exp]	2.00	0.9009
AT1G21340	DOF	AtDof1,2	Dof-type zinc finger DNA-bindi...		Potri.002G070700 [exp]	2.44	0.8799
AT2G25220			Protein kinase superfamily pro...		Potri.003G179500 [exp]	5.47	0.8517
AT2G27310			F-box family protein (.1)		Potri.002G054500 [exp]	8.00	0.7949
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	8.24	0.8561
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.001G463800 [exp]	8.48	0.8137	FAH1.2
AT2G18280	TUB	AtTLP2	tubby like protein 2 (.1.2)		Potri.007G023400 [exp]	10.19	0.8079
AT5G03260		LAC11	laccase 11 (.1)		Potri.009G102700 [exp]	11.61	0.7713
AT1G30570		HERK2	hercules receptor kinase 2 (.1...		Potri.011G164700 [exp]	13.74	0.7858

Compare expression of checked genes

Potri.005G070300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.