Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05270 308 / 4e-96 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G77580 223 / 4e-64 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT1G21810 187 / 4e-51 Plant protein of unknown function (DUF869) (.1) AT1G19835 120 / 8e-28 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT4G36120 114 / 7e-26 Plant protein of unknown function (DUF869) (.1) AT1G47900 106 / 1e-23 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) AT2G23360 77 / 2e-14 Plant protein of unknown function (DUF869) (.1) AT3G19370 55 / 2e-07 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2), Plant protein of unknown function (DUF869) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098500 [exp] 830 / 0 AT3G05270 310 / 7e-97 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G083400 [exp] 440 / 1e-145 AT3G05270 334 / 2e-105 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G178100 [exp] 424 / 2e-140 AT3G05270 356 / 1e-114 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.002G024400 [exp] 124 / 4e-29 AT1G19835 941 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.005G237100 [exp] 122 / 1e-28 AT1G19835 869 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Potri.001G304200 [exp] 92 / 7e-19 AT2G23360 279 / 2e-80 Plant protein of unknown function (DUF869) (.1) Potri.007G046100 [exp] 91 / 9e-19 AT2G23360 549 / 3e-180 Plant protein of unknown function (DUF869) (.1) Potri.005G140300 [exp] 89 / 3e-18 AT2G23360 551 / 0.0 Plant protein of unknown function (DUF869) (.1) Potri.009G099500 [exp] 84 / 2e-16 AT2G23360 295 / 2e-86 Plant protein of unknown function (DUF869) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018164 [exp] 333 / 3e-104 AT1G77580 395 / 6e-129 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10025674 [exp] 317 / 4e-98 AT1G77580 343 / 9e-109 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10000186 [exp] 299 / 2e-92 AT1G77580 333 / 4e-106 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10042719 [exp] 233 / 7e-67 AT1G77580 386 / 5e-125 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10029679 [exp] 228 / 1e-64 AT1G77580 372 / 1e-119 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012712 [exp] 157 / 4e-41 AT1G77580 233 / 1e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10010888 [exp] 143 / 3e-36 AT1G77580 233 / 2e-69 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10024324 [exp] 113 / 1e-25 AT1G19835 919 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10012431 [exp] 112 / 2e-25 AT1G19835 901 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2) Lus10034509 [exp] 109 / 4e-25 AT1G19835 582 / 0.0 Plant protein of unknown function (DUF869) (.1), Plant protein of unknown function (DUF869) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05911 [poplar] [flax] FPP Filament-like plant protein, long coiled-coil
Representative CDS sequence Show only first row Show all	>Potri.005G070400.4 pacid=42804451 polypeptide=Potri.005G070400.4.p locus=Potri.005G070400 ID=Potri.005G070400.4.v4.1 annot-version=v4.1 ATGGACAGGAGGAGTTGGTTATGGAGAAGGAAGTCTTCAGAGAAGAGTCCTGGGGAGACAGAGAGTTCAGGATCCATCTCTTCTCATTCTGAAAGATTCT CTGATGATCAGGTATATCCAACTCATAATCCTCAATCACCAGAAGTTACATCTGAAGCTTTACTTACTGATGAAGACATTAGAGACAATGTGAGGACCTT AACAGATAAACTATCTGCTGCTCTCCTGAACCTTAGTGCCAAAGAAGAGTTGGTAAAGCAGCATGCCAAAGTTGCAGAAGAAGCAGTTTCAGGGTGGGAG AAAGCTGAAAAAGAACTGTCAGCTTTAAAGCAACAAATTGAGGCTGGTACTAAGAAGAACTCTGGACTTGAAGATAGAGTTTCTCATCTGGATGCAGCAC TTAAGGAGTGTGTGAGGCAGCTAAGACAATCAAGAGAAGAGCAAGAGAGAAGGATCAATGAAGCTGTTACCAAGAAAATTTGCGAACGGGAATCAACAAA GTCTGAGCTTGAGGCCCAGCTCATTGAGCTCCAGGCTCGACTTCAAACTGCAAAAAGTGATGCCACTGTGTCAGCTGATTCTGAGTTATGGCAAAAGCTT AATGCTGTAGAGAAAGAGAATTTGTCCCTTAAGCGTGAGCTCTTTTCTCGAGCTGAGGAGATACAGGTTAGAATTTTGGAGAGGGACTTGAGCACCCAGG CTGCTGAAACAGCAAGCAAACTACAACTGGAAAGTATAAAGAAGCTTGCTAAACTTGAAGCTGAGTGTCGCAAGTTGAAAGCCATTGCTCGTAAAGCATC AGCTGCTAATGATCATAAATCTTTAACAGCCTCTTCAATTTGTGCTGAGTCTTTCACAGACAGCCAATCCGATAATGGGGAGAGGCTACTGGCAATTGAA AGTGATTCATGCAAGAGGAGCGGCTTGGAAATGAATGAATGTGATCAAATTTGCTCTGACTCATGGGCATGTGCTCATGCTACCGAACTTGATCAATCCA AGAAGCAGAGGCCTATTGGAAGAAACGTAATGGCCCCTTCTTTAGAAATTAATCTCATGGATGATTTTCTGGAAATGGAAAGACTTGCAGCTTTGCTAGA TACAGAAAGTGGAATTTCTTACCTTGAGGCAGGACCTGTATCAGATAAAGGAAATGGTAGTGGAAACCCATTGAAAGAAGAACTTGAATCCATCATTAAC AGGACTACTGAACTGGAGGAGAAGTTGGATAAGATGGAAGAAGAAAAATTTAAATCAGAAATGGCCTTGACTGAATGCCAGAGGCAGCTTGAGACATTAA GGAGTCAGCTGAAGGAAGCAGATGCAAAGATGGAGGAGCTGCAAGATCTGTTGACTCTTGCAAATGAATCAAGACAAGCTAGAGAGGAAGAGATAATGCG ATCTGATTCAAAGAGAAAAGAGACAGAATCACAACTCAGAATTGCTGAAGCTGAGATCAAAACCTTGCTTTCTAAAATTGTTTCATTAGATGCAGAGGTT GAGAAGGAGCGTGCTTTGTCAGCTGAAAATGCTGCAAAGAGCCAGGAGTTGGAGGATGAGCTCTCAAAAATGAAATGTGAAGTTGAGCTCCAGCATGAGA TTGAGCGCAAGCGTATTGCCAGCTTTAACGAAGAGTTGAAGATAACACAGGAGAAAGAGCTAGCTGTTGCTGCAAGTAAACTTGCCGAGTGCCAGAAAAC CATATCTTCTCTTGGTCTTCAATTGAAATCTCTTGCAACTTTGGAAGACCTGCTTGATTCTGATAAATCATCGGATGTCAGTAGTGAAGAATCAAAGGAT CATGAGAATGGTGAACGCTGGAGATTAGATCTTGGAAATCAATCTTCAGGTAGAGATTCTGAGGCTATCCAAGTCACCGGAGGTGCTTTAAGATTAAAGA ATGGCGGTGATTGGGAGTCGTCATTATCATTAAACTCGAGCTTTGTTTCTGAAAAAACCCGAAGTGGGTTTGGAAAGTTTTTCCCCAGAGGTCAGAGTAG GGCTCCAAATGAAAACTAG
AA sequence Show only first row Show all	>Potri.005G070400.4 pacid=42804451 polypeptide=Potri.005G070400.4.p locus=Potri.005G070400 ID=Potri.005G070400.4.v4.1 annot-version=v4.1 MDRRSWLWRRKSSEKSPGETESSGSISSHSERFSDDQVYPTHNPQSPEVTSEALLTDEDIRDNVRTLTDKLSAALLNLSAKEELVKQHAKVAEEAVSGWE KAEKELSALKQQIEAGTKKNSGLEDRVSHLDAALKECVRQLRQSREEQERRINEAVTKKICERESTKSELEAQLIELQARLQTAKSDATVSADSELWQKL NAVEKENLSLKRELFSRAEEIQVRILERDLSTQAAETASKLQLESIKKLAKLEAECRKLKAIARKASAANDHKSLTASSICAESFTDSQSDNGERLLAIE SDSCKRSGLEMNECDQICSDSWACAHATELDQSKKQRPIGRNVMAPSLEINLMDDFLEMERLAALLDTESGISYLEAGPVSDKGNGSGNPLKEELESIIN RTTELEEKLDKMEEEKFKSEMALTECQRQLETLRSQLKEADAKMEELQDLLTLANESRQAREEEIMRSDSKRKETESQLRIAEAEIKTLLSKIVSLDAEV EKERALSAENAAKSQELEDELSKMKCEVELQHEIERKRIASFNEELKITQEKELAVAASKLAECQKTISSLGLQLKSLATLEDLLDSDKSSDVSSEESKD HENGERWRLDLGNQSSGRDSEAIQVTGGALRLKNGGDWESSLSLNSSFVSEKTRSGFGKFFPRGQSRAPNEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05270			Plant protein of unknown funct...		Potri.005G070400 [exp]	0	1
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.010G067100 [exp]	1.73	0.9194
AT1G22060			unknown protein		Potri.002G091700 [exp]	2.00	0.8898
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.003G130700 [exp]	3.46	0.9049
AT2G25355			PNAS-3 related (.1.2)		Potri.015G075400 [exp]	7.74	0.8559
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Potri.002G256600 [exp]	8.66	0.8901	Pt-IAA11.1
AT2G33385		ARPC2B	actin-related protein C2B (.1....		Potri.008G170800 [exp]	8.77	0.8736
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Potri.017G057900 [exp]	9.48	0.8892	BGAL9.1
AT2G03890		UBDKGAMMA7, ATP...	UBIQUITIN-LIKE DOMAIN KINASE G...		Potri.010G137400 [exp]	12.32	0.8327
AT1G27500			Tetratricopeptide repeat (TPR)...		Potri.015G075300 [exp]	16.79	0.8820
AT2G36450	AP2_ERF	HRD	HARDY, Integrase-type DNA-bind...		Potri.016G018600 [exp]	18.16	0.8095

Compare expression of checked genes

Potri.005G070400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.