Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52950 750 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) AT2G36500 671 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50530 547 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G50640 547 / 0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G63490 517 / 1e-179 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) AT5G10860 55 / 2e-08 CBSX3 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) AT1G47271 52 / 3e-07 Cystathionine beta-synthase (CBS) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098400 [exp] 913 / 0 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Potri.012G099600 [exp] 602 / 0 AT5G50530 639 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.015G098100 [exp] 551 / 0 AT5G50530 628 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Potri.005G228300 [exp] 58 / 2e-09 AT1G47271 251 / 1e-85 Cystathionine beta-synthase (CBS) family protein (.1) Potri.013G161500 [exp] 58 / 2e-09 AT5G10860 343 / 8e-122 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Potri.017G000100 [exp] 55 / 2e-08 AT5G10860 339 / 2e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025698 [exp] 738 / 0 AT3G52950 728 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10035965 [exp] 721 / 0 AT3G52950 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1), CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.2) Lus10043123 [exp] 556 / 0 AT5G50530 714 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10032625 [exp] 556 / 0 AT5G50530 721 / 0.0 CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein (.1) Lus10019117 [exp] 54 / 6e-08 AT5G10860 347 / 2e-123 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10035014 [exp] 53 / 1e-07 AT5G10860 341 / 5e-121 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10001964 [exp] 52 / 4e-07 AT1G47271 202 / 5e-66 Cystathionine beta-synthase (CBS) family protein (.1) Lus10021675 [exp] 51 / 6e-07 AT5G10860 338 / 7e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1) Lus10034441 [exp] 52 / 1e-06 AT5G10860 350 / 4e-120 CBS domain containing protein 3, Cystathionine beta-synthase (CBS) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0072 [poplar] [flax] PF00571 [poplar] [flax] CBS CBS domain
Representative CDS sequence Show only first row Show all	>Potri.005G070500.1 pacid=42804206 polypeptide=Potri.005G070500.1.p locus=Potri.005G070500 ID=Potri.005G070500.1.v4.1 annot-version=v4.1 ATGAGCAGTCAAATGGGTCCTCCTCCTCCAAAGAGAACCAGTTTGACCCAAAAACGAGGCCCATCCACAGCCAGGAAATTATCATCCTCATCGGCGTCTC TAGCTTCTGAGAATGGCGGCACAACAACCACCAACATCTCCCAAGTCGGCAACTCCTCCAAGCCCTCCTCTCCTAACGCTCCATCGTCTGTGGGAGGGGA AAGGACAGTGAAGAAACTGAAGTTATCGAAAGCACTAACAATCCCGGAGGGAACCACAGTATTTGATGCTTGTAGGAGAATGGCAGCTCGTCGTGTCAAT GCTGTTTTATTGACTGATGCTAATGCGTTGCTTTCTGGGATTGTTACTGACAAGGACATTTCGGCGAGAGTAATCGCGGAGGGGTTGAGGCCGGAGCATA CAATAGTGTCAAAGATTATGACAAGAAATCCTATTTTTGTCACATCGGATTCATTAGCCATCGAAGCGCTACAGAAGATGGTGCAGGGCAAGTTCAGGCA CCTCCCTGTAGTGGAGAATGGTGAAGTTATTGCATTGCTGGATATAACAAGGTGCCTCTATGATGCTATATCTAGAATGGAGAAGGCTGCTGAGCAGGGG AGTGCCATCGCTGCTGCTGTTGAAGGGGTGGAGCGTCAGTGGGGAAACAATTTTACTGCTCCATATGCTTTCATAGAAACTCTGAGGGAGCGGATGTTCA AGCCTTCCTTGTCAACAATTATTGGTGAACAGTCAAAGGTTGCAATTGCTTCACCATCAGATCCTGTCTATGCTGCTACAAAAAAGATGCGGGAGTTGCG GGTTAATTCAGTTATTGTTGTGACCGGGAACAAAATTCAGGGGATACTCACTTCAAAGGATATTCTCATGCGAGTTGTGGCACAAAATCTTTCTCCTGAG TTGACTCTTGTGGAAAAGGTAATGACACTGAACCCTGAATGTGTAACATTGGAAACAACAATTCTCGATGCATTACATGTAATGCATGATGGGAAGTTTT TGCATCTTCCTGTTGTGGATAAGGATGGGTCTGTTGCTGCATGTTTAGATGTTCTGCAGATAACTCACGCAGCAATTTCCTTGGTTGAAAGTAGCTCTGG AGCTGTTAATGACGTGGCCAACACAATGATGCAAAAGTTCTGGGATTCTGCTCTTGCTTTAGAACCAGCAGATGATTATGACACCCAAAGTGAAATGTCT GCACTAATGGCATCAGATGCGACAGAACTGGGAAGGTATCCGTCTCTTGGTCTTGGAAATTCATTTGCCTTCAAATTTCAGGATCTAAAAGGCCGAGTAC ATCGACTCAACTGTGGCACTGAGAATTTAAATGAGCTTCTTTCTACTGTCTTGCAAAGGATTGGTGCTGATAATGAGCAAGACCGACCCCAACTTTTGTA TGAAGATGATGAAGGTGATAAAGTTTTGCTTGCAACTGATGGTGATCTCATTAGTGCTGTTAACCATGCTAGATCAGGGGGTCTGAAGGTTTTAAGGCTG CACCTTGACTATTATGATCCAAGTCATCAAACAACATCACCGTCGAGTACAACTACAACTACCACCCAGAGAGCTGGATTGGTGTCTCTCCGCTCTGGCA TCTTGGCAGCTGGTGTTGTTTTAGCAGGCGTTGCTGTGGTCGTGTACTTAAAGCGCGCAAAATTGTGA
AA sequence Show only first row Show all	>Potri.005G070500.1 pacid=42804206 polypeptide=Potri.005G070500.1.p locus=Potri.005G070500 ID=Potri.005G070500.1.v4.1 annot-version=v4.1 MSSQMGPPPPKRTSLTQKRGPSTARKLSSSSASLASENGGTTTTNISQVGNSSKPSSPNAPSSVGGERTVKKLKLSKALTIPEGTTVFDACRRMAARRVN AVLLTDANALLSGIVTDKDISARVIAEGLRPEHTIVSKIMTRNPIFVTSDSLAIEALQKMVQGKFRHLPVVENGEVIALLDITRCLYDAISRMEKAAEQG SAIAAAVEGVERQWGNNFTAPYAFIETLRERMFKPSLSTIIGEQSKVAIASPSDPVYAATKKMRELRVNSVIVVTGNKIQGILTSKDILMRVVAQNLSPE LTLVEKVMTLNPECVTLETTILDALHVMHDGKFLHLPVVDKDGSVAACLDVLQITHAAISLVESSSGAVNDVANTMMQKFWDSALALEPADDYDTQSEMS ALMASDATELGRYPSLGLGNSFAFKFQDLKGRVHRLNCGTENLNELLSTVLQRIGADNEQDRPQLLYEDDEGDKVLLATDGDLISAVNHARSGGLKVLRL HLDYYDPSHQTTSPSSTTTTTTQRAGLVSLRSGILAAGVVLAGVAVVVYLKRAKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G52950			CBS / octicosapeptide/Phox/Bem...		Potri.005G070500 [exp]	0	1
AT3G16910		AAE7, ACN1	ACETATE NON-UTILIZING 1, acyl-...		Potri.008G108000 [exp]	2.44	0.8717
AT4G03200			catalytics (.1.2)		Potri.002G209900 [exp]	4.89	0.8393
AT3G07560		APM2, PEX13	ABERRANT PEROXISOME MORPHOLOGY...		Potri.014G197200 [exp]	4.89	0.8482
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.016G066400 [exp]	5.29	0.8643
AT2G44410			RING/U-box superfamily protein...		Potri.001G229600 [exp]	6.00	0.8340
AT5G53400		BOB1, BOBBER1	BOBBER1, HSP20-like chaperones...		Potri.001G132500 [exp]	11.83	0.8384
AT5G62810		ATPEX14, PED2, ...	PEROXISOME DEFECTIVE 2, peroxi...		Potri.015G076100 [exp]	13.03	0.8321
AT1G71800		CSTF64	cleavage stimulating factor 64...		Potri.002G061200 [exp]	15.29	0.8375
AT5G41960			unknown protein		Potri.003G146100 [exp]	18.46	0.8315
AT2G02370			SNARE associated Golgi protein...		Potri.001G078700 [exp]	19.18	0.8342

Compare expression of checked genes

Potri.005G070500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.