Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08720 905 / 0 unknown protein AT4G01650 100 / 1e-23 Polyketide cyclase / dehydrase and lipid transport protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G185100 [exp] 91 / 9e-20 AT4G01650 246 / 9e-82 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Potri.014G110600 [exp] 86 / 2e-18 AT4G01650 259 / 2e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035962 [exp] 923 / 0 AT5G08720 855 / 0.0 unknown protein Lus10025701 [exp] 910 / 0 AT5G08720 832 / 0.0 unknown protein Lus10010086 [exp] 86 / 5e-18 AT4G01650 257 / 2e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2) Lus10007203 [exp] 84 / 2e-17 AT4G01650 257 / 5e-86 Polyketide cyclase / dehydrase and lipid transport protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF03364 [poplar] [flax] Polyketide_cyc Polyketide cyclase / dehydrase and lipid transport
Representative CDS sequence Show only first row Show all	>Potri.005G070700.6 pacid=42802973 polypeptide=Potri.005G070700.6.p locus=Potri.005G070700 ID=Potri.005G070700.6.v4.1 annot-version=v4.1 ATGATCACTTGCAAAGCTTCAAGCTTCAATTTCGAAACCAACCCATCTCATCAAATTACGCTTAAAAGATACCTACCAAGTTCACAAGCTAAGTACCGGC CATCTCATAGAAGCACAGCGGTGTCATGTTCTTCTTCTTCCGTTGGGGGGCTGAAATGGAACACCACAACCACAAAGGCAAGTCAAAGAGAGAAGAAGTC CCAGAAAGAGGAAGGAGAGGAAGGAGAGGAAGGAGAAGGAGAAGGAGAAAGGAAGGTGCATTGTGAAGTGGAAGTTATTTCTTGGCGGGAAAGAAGAATT AAGGCACAGATATTAGTCTACGCTGACATTCAATCAGTCTGGAATTCTCTCACTGATTATGAGCGACTTGCTGATTTTATTCCAAATCTTGTTTGCAGTG GGAGAATCCCTTGCCCACATCCTGGGAGGGTATGGTTAGAGCAGAGAGGATTGCAAAGGGCACTCTATTGGCACATTGAAGCTCGTGTTGTCTTGGATCT CCAAGAATTTCCCCATTCAGCCAATAATCGTGAACTACACTTTTCAATGGTTGATGGGGATTTTAAAAAGTTCGAAGGCAAATGGTCATTGAGATCTGGG ACAAGGCATGGAACAACAACATTGTCATATGAAGTTAATGTGATGCCACGATACAACTTTCCAGCTATTTTTCTGGAGAGGATTATTGGATCAGATCTTC CTGTAAATCTTCGAGCCTTGGCTTGTCGGGCAGAGAGAGATTTTGAGGGGAACCAGAAGACAGGAATTACAGAGAGTGAGACATCCATGACTGCATCTAC TTCTCCTGGAATGGTTTTGGATGGTGCTTTTCGTGAGAAGGATAAACTGTCAACTGAAGATTTAAAACAGAGTTATCCCAGCTCAACTTTTGGTCCCATG CTGCCACCTTCAAATGATTTGAACAATAACTGGGGGGTGCTTGGAAAAGCTTGCAGATTGGACAGGCGTTGCATGGTGGATGAAGTTCATCTGCGCAGAT ATGATGGCCTTTTGGAAAATGGAGGGGTTCATCGCTGTGTTTTTGCTAGCATAACTGTAAAAGCTCCTGTTCGTGAAGTTTGGAATGTTTTGACTGCTTA TGAGAGTCTTCCCGAGTTTGTTCCAAACTTAGCCATCAGTAAGATTTTATCTCGAGAAAACAATAAAGTTCGCATTCTTCAGGAAGGATGTAAGGGCCTA TTGTATATGGTACTTCATGCACGTGTTGTTCTAGATTTATGTGAACACCTTGAACAGGAAATCAGTTTTGAGCAGGTAGAAGGGGACTTCGATTCATTTC AAGGAAAATGGATTCTAGAGCAATTAGGAAGCCACCACACGCTACTGAAATATAATGTGGAGTCCAAAACGCACAGAGATACATTCCTTTCTGAAGCTAT TATGGAAGAGGTTATATATGAAGATCTCCCATCAAATTTATGTGCAATTCGAGACTATATCGAGAAAAGGGAATCCAACAACTCTTCGGAAACAGAAGAA CATGGACAATATTCGAAGGAATTGGATTCATCCAGAGGTGACAGTTATCACGAGCACAGTATGGCAGTTCAGCAGGTTTCTGATGTCAGTAACCCAAATT CACTTAAACAAAGACCCAGGGTCCCGGGATTGCAACGAGATATTGATGTTCTTAAATCTGAGCTGCTGAAGTTCATTTCAGAACATGGGCAGGAAGGATT TATGCCCATGAGAAAGCAGCTTCGTTTGCATGGTAGAGTAGATATTGAGAAGGCCATAACACGAATGGGTGGATTTCGAAGGATTGCGACATTAATGAAT CTCTCCCTTGCATACAAGCACCGTAAACCAAAGGGATACTGGGACAACCTTGAGAATTTACAGGAAGAGATTAGTCGATTCCAAAGGAGTTGGGGAATGG ACCTTTCATTTATGCCAAGTAGAAAATCTTTTGAGCGTGCAGGGCGATATGACATTGCACGAGCTTTGGAGAAATGGGGAGGACTTCATGAAGTTTCTCG TCTCTTGGCTCTCAAGGTGAGGCACCCCAATAGACAGGCAAATTCTATCAAGGATAGGAAAATTGATGATGTTAGTACTGATGCTGAAGGTGAAGACAAG ATTCCAACAAAAGCATATGTATCTCAGGATACACAAAAATGGCTCATGAAATTTAAAGATTTGGACATTAATTGGGTTGATTAA
AA sequence Show only first row Show all	>Potri.005G070700.6 pacid=42802973 polypeptide=Potri.005G070700.6.p locus=Potri.005G070700 ID=Potri.005G070700.6.v4.1 annot-version=v4.1 MITCKASSFNFETNPSHQITLKRYLPSSQAKYRPSHRSTAVSCSSSSVGGLKWNTTTTKASQREKKSQKEEGEEGEEGEGEGERKVHCEVEVISWRERRI KAQILVYADIQSVWNSLTDYERLADFIPNLVCSGRIPCPHPGRVWLEQRGLQRALYWHIEARVVLDLQEFPHSANNRELHFSMVDGDFKKFEGKWSLRSG TRHGTTTLSYEVNVMPRYNFPAIFLERIIGSDLPVNLRALACRAERDFEGNQKTGITESETSMTASTSPGMVLDGAFREKDKLSTEDLKQSYPSSTFGPM LPPSNDLNNNWGVLGKACRLDRRCMVDEVHLRRYDGLLENGGVHRCVFASITVKAPVREVWNVLTAYESLPEFVPNLAISKILSRENNKVRILQEGCKGL LYMVLHARVVLDLCEHLEQEISFEQVEGDFDSFQGKWILEQLGSHHTLLKYNVESKTHRDTFLSEAIMEEVIYEDLPSNLCAIRDYIEKRESNNSSETEE HGQYSKELDSSRGDSYHEHSMAVQQVSDVSNPNSLKQRPRVPGLQRDIDVLKSELLKFISEHGQEGFMPMRKQLRLHGRVDIEKAITRMGGFRRIATLMN LSLAYKHRKPKGYWDNLENLQEEISRFQRSWGMDLSFMPSRKSFERAGRYDIARALEKWGGLHEVSRLLALKVRHPNRQANSIKDRKIDDVSTDAEGEDK IPTKAYVSQDTQKWLMKFKDLDINWVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08720			unknown protein		Potri.005G070700 [exp]	0	1
AT5G56850			unknown protein		Potri.006G151100 [exp]	9.79	0.9152
AT3G17040		HCF107	high chlorophyll fluorescent 1...		Potri.010G145000 [exp]	14.14	0.9221
AT5G42070			unknown protein		Potri.001G089500 [exp]	22.44	0.9245
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G012600 [exp]	29.54	0.9226
AT4G02920			unknown protein		Potri.002G215800 [exp]	31.93	0.9221
AT3G15354		SPA3	SPA1-related 3 (.1)		Potri.001G399600 [exp]	37.78	0.9034	Pt-SPA3.1
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.011G144300 [exp]	45.49	0.9008
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Potri.010G065600 [exp]	48.66	0.9195	RNP1.1
AT5G27290			unknown protein		Potri.013G029000 [exp]	62.57	0.9102
AT5G52420			unknown protein		Potri.012G143300 [exp]	65.66	0.9092

Compare expression of checked genes

Potri.005G070700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.