Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80900 39 / 0.0001 MRS2-10, ATMGT1 magnesium transporter 1 (.1) AT3G19640 39 / 0.0003 MRS2-3, MGT4 magnesium transporter 4 (.1) AT1G16010 37 / 0.0006 AtMRS2-1, AtMGT2, MRS2-1, MGT2 magnesium transporter 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G098000 [exp] 92 / 4e-23 AT1G80900 252 / 2e-79 magnesium transporter 1 (.1) Potri.007G098200 [exp] 82 / 7e-20 AT1G80900 301 / 1e-98 magnesium transporter 1 (.1) Potri.009G086300 [exp] 45 / 9e-07 AT3G19640 431 / 4e-148 magnesium transporter 4 (.1) Potri.001G043200 [exp] 39 / 0.0001 AT1G16010 637 / 0.0 magnesium transporter 2 (.1.2.3) Potri.003G183600 [exp] 39 / 0.0003 AT1G16010 699 / 0.0 magnesium transporter 2 (.1.2.3) Potri.001G291866 [exp] 38 / 0.0004 AT3G19640 167 / 3e-49 magnesium transporter 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026745 [exp] 45 / 2e-06 AT3G19640 401 / 2e-138 magnesium transporter 4 (.1) Lus10025531 [exp] 44 / 3e-06 AT3G19640 407 / 8e-140 magnesium transporter 4 (.1) Lus10026063 [exp] 38 / 0.0004 AT1G16010 744 / 0.0 magnesium transporter 2 (.1.2.3) Lus10014353 [exp] 38 / 0.0004 AT1G16010 745 / 0.0 magnesium transporter 2 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.005G070800.2 pacid=42804364 polypeptide=Potri.005G070800.2.p locus=Potri.005G070800 ID=Potri.005G070800.2.v4.1 annot-version=v4.1 ATGGATTATAATGGCACTGACAAGGAGGGTGTCGTTGAGGATACTTGGGGTTCACCCTCATGTTTCAGAGAAAGACTTAAGCAAGAGAAGAGATCCAGCT TTTCTGCAGACATGAAAAGTCAGGAAATAGTGGGTGAGGGTGCAAATACAACAATGAATGTTCCAGTAGCTGCAGGTCCCAGATTGCTTCCTTTCGAGTT CAGAGCACTTGAAGCTTGCCTGGAGTCTGCTTGCAGGTGCCTTGAACGTGAGGTACATGGTCTGTCTATTATCTGTGACCACTTGTATTTCATCATCTGA
AA sequence Show only first row Show all	>Potri.005G070800.2 pacid=42804364 polypeptide=Potri.005G070800.2.p locus=Potri.005G070800 ID=Potri.005G070800.2.v4.1 annot-version=v4.1 MDYNGTDKEGVVEDTWGSPSCFRERLKQEKRSSFSADMKSQEIVGEGANTTMNVPVAAGPRLLPFEFRALEACLESACRCLEREVHGLSIICDHLYFII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.005G070800 [exp]	0	1
AT5G40080			Mitochondrial ribosomal protei...		Potri.005G161600 [exp]	2.64	0.7416
AT2G47010			unknown protein		Potri.002G187700 [exp]	3.74	0.7049
AT4G00840			DHHC-type zinc finger family p...		Potri.014G104000 [exp]	9.05	0.7310
AT2G25770			Polyketide cyclase/dehydrase a...		Potri.010G193200 [exp]	10.48	0.6914
					Potri.005G078050 [exp]	11.83	0.6176
					Potri.010G104050 [exp]	16.70	0.6510
					Potri.008G185350 [exp]	22.80	0.7205
AT2G22610			Di-glucose binding protein wit...		Potri.002G110600 [exp]	24.39	0.7196
AT1G16520			unknown protein		Potri.007G066900 [exp]	35.46	0.6766
AT5G45660			unknown protein		Potri.011G076600 [exp]	44.72	0.6974

Compare expression of checked genes

Potri.005G070800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.