Plant FIBer expression Database

Potri.005G071400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G46550 79 / 8e-18 unknown protein
AT1G01240 53 / 4e-08 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G097400
[exp]
315 / 1e-110 AT2G46550 66 / 5e-13 unknown protein
Potri.002G173200
[exp]
66 / 9e-13 AT2G46550 180 / 2e-52 unknown protein
Potri.014G100300
[exp]
60 / 2e-10 AT2G46550 213 / 2e-64 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012748
[exp]
110 / 2e-30 AT2G46550 57 / 6e-10 unknown protein
Lus10023163
[exp]
109 / 9e-30 AT2G46550 60 / 5e-11 unknown protein
Lus10030237
[exp]
54 / 2e-08 AT2G46550 273 / 3e-88 unknown protein
Lus10005973
[exp]
52 / 7e-08 AT2G46550 269 / 2e-86 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G071400.1 pacid=42803613 polypeptide=Potri.005G071400.1.p locus=Potri.005G071400 ID=Potri.005G071400.1.v4.1 annot-version=v4.1
ATGGCTGGATGGCCGGCAACAAACAACCAGAAGATGGATTCTAGAGCTGTGAAAGAGAATGATATGTGGTTGGGTCCCTTGCTTTCTCCAAATTCTGGTA
CTGACTTATTGCAGAATTGTGATCTGCCTCCACCATTGAAGGTTTTTTCTTGGTCAGATAGGACTGTCATATCATCGATGAATAGAGGTTTTAGCATGAC
GAGAAGGGAACATGATCATGATGATTTTGATGTGTATAGTGGTTCTGGTGGTGAGAATTACGAGAAGTTGGAGCTTCTGAAGGCATTAAGGTTGTCACAG
ACAAGAGCAAGGGAAGCTGAGAGGAAGGCTGCAAGTTTGGTTAAGGAGAGGGATTGTGTTGCCAAAGCTTTGTTGCATGAGTCCTTTCAGTTATTTGTTT
ATCGTCAATGGGTGAGGCTGCTTGAGTTTCAAGTTTTGAAGGCACAAACACAACGTCAACAGCAAGAAAAGAAATTGTGTTGTGGTTGTGGTAGATCAAA
GGAGGCGAAAGACCATTCAGAAGAAGAAGAGGCTCTTTGTGATGGGAGCAGGGAGTCTTGGATTTGTGTGGCTTTGACATTTTGTATGGGCATTGTTGGT
TTAGGACTTGCCTTTGGTTGCTGTTATTTCTTATGA
AA sequence
>Potri.005G071400.1 pacid=42803613 polypeptide=Potri.005G071400.1.p locus=Potri.005G071400 ID=Potri.005G071400.1.v4.1 annot-version=v4.1
MAGWPATNNQKMDSRAVKENDMWLGPLLSPNSGTDLLQNCDLPPPLKVFSWSDRTVISSMNRGFSMTRREHDHDDFDVYSGSGGENYEKLELLKALRLSQ
TRAREAERKAASLVKERDCVAKALLHESFQLFVYRQWVRLLEFQVLKAQTQRQQQEKKLCCGCGRSKEAKDHSEEEEALCDGSRESWICVALTFCMGIVG
LGLAFGCCYFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G46550 unknown protein Potri.005G071400
[exp]
0 1
AT4G27745 Yippee family putative zinc-bi... Potri.015G009200
[exp]
1.00 0.9480
AT4G32330 TPX2 (targeting protein for Xk... Potri.006G254400
[exp]
1.73 0.9308
AT3G21240 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) Potri.003G188500
[exp]
2.44 0.9094 Pt-4CL.4
AT1G24120 ARL1 ARG1-like 1 (.1) Potri.010G036200
[exp]
2.64 0.9080
AT3G05327 Cyclin family protein (.1) Potri.005G033600
[exp]
5.09 0.9449
AT5G50260 CEP1 cysteine endopeptidase 1, Cyst... Potri.015G087400
[exp]
7.48 0.9077 Pt-CYSP2.1
AT4G10030 alpha/beta-Hydrolases superfam... Potri.019G074600
[exp]
8.24 0.9208
AT4G10150 RING/U-box superfamily protein... Potri.014G076800
[exp]
8.66 0.9167
AT5G47870 RAD52-2B, RAD52... radiation sensitive 51-2, unkn... Potri.003G158500
[exp]
8.71 0.8829
AT4G28500 NAC ANAC073, SND2, ... SECONDARY WALL-ASSOCIATED NAC ... Potri.004G049300
[exp]
11.74 0.8772

Potri.005G071400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.