Potri.005G071500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G01020 1981 / 0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
AT5G10370 1979 / 0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
AT3G26560 435 / 3e-129 ATP-dependent RNA helicase, putative (.1)
AT1G32490 393 / 1e-115 EMB2733, ESP3 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2)
AT2G35340 379 / 1e-110 MEE29 maternal effect embryo arrest 29, helicase domain-containing protein (.1)
AT5G13010 369 / 8e-106 EMB3011 embryo defective 3011, RNA helicase family protein (.1)
AT2G47250 340 / 2e-100 RNA helicase family protein (.1)
AT3G62310 340 / 2e-100 RNA helicase family protein (.1)
AT1G26370 338 / 9e-100 RID1 RNA helicase family protein (.1)
AT1G27900 330 / 3e-97 RNA helicase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G050100 1927 / 0 AT4G01020 1719 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Potri.015G024400 444 / 2e-132 AT3G26560 1768 / 0.0 ATP-dependent RNA helicase, putative (.1)
Potri.012G034200 443 / 9e-132 AT3G26560 1744 / 0.0 ATP-dependent RNA helicase, putative (.1)
Potri.015G008700 382 / 1e-111 AT1G32490 1541 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2)
Potri.010G172500 373 / 6e-107 AT5G13010 1715 / 0.0 embryo defective 3011, RNA helicase family protein (.1)
Potri.002G192500 337 / 3e-99 AT3G62310 1276 / 0.0 RNA helicase family protein (.1)
Potri.014G117900 335 / 2e-98 AT3G62310 1252 / 0.0 RNA helicase family protein (.1)
Potri.008G096800 333 / 4e-98 AT1G26370 1019 / 0.0 RNA helicase family protein (.1)
Potri.004G052700 328 / 3e-96 AT4G18465 1092 / 0.0 RNA helicase family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023162 2085 / 0 AT5G10370 1876 / 0.0 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
Lus10036783 446 / 7e-133 AT3G26560 1790 / 0.0 ATP-dependent RNA helicase, putative (.1)
Lus10037145 414 / 2e-122 AT3G26560 1529 / 0.0 ATP-dependent RNA helicase, putative (.1)
Lus10031647 376 / 7e-109 AT1G32490 1545 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2)
Lus10036991 341 / 9e-101 AT1G27900 1089 / 0.0 RNA helicase family protein (.1)
Lus10015812 339 / 3e-100 AT1G27900 1097 / 0.0 RNA helicase family protein (.1)
Lus10005261 329 / 4e-96 AT3G62310 1300 / 0.0 RNA helicase family protein (.1)
Lus10033690 332 / 5e-93 AT1G32490 1399 / 0.0 ENHANCED SILENCING PHENOTYPE 3, EMBRYO DEFECTIVE 2733, RNA helicase family protein (.1.2)
Lus10037067 315 / 1e-91 AT1G26370 927 / 0.0 RNA helicase family protein (.1)
Lus10012750 295 / 1e-84 AT5G10370 267 / 9e-76 helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00270 DEAD DEAD/DEAH box helicase
CL0023 P-loop_NTPase PF00271 Helicase_C Helicase conserved C-terminal domain
CL0023 PF04408 HA2 Helicase associated domain (HA2)
CL0021 OB PF07717 OB_NTP_bind Oligonucleotide/oligosaccharide-binding (OB)-fold
Representative CDS sequence
>Potri.005G071500.1 pacid=42803532 polypeptide=Potri.005G071500.1.p locus=Potri.005G071500 ID=Potri.005G071500.1.v4.1 annot-version=v4.1
ATGAGAAAGTCATCTTTTCACCGCACCACTACCCGGCGCAACCCATCTCCACCCCGCCACCACCGTCCTCCCCTCACCACCAACAACAACAACAACAATT
TTCCCACAACAAGAAACGCCCGTAGGACTTCCCCTAACTTCATAATCCACCTTCACCTGGACCCCACGCTCGCACCTTCCAACAAAAGACCAGACCCCAA
CACTGTAAACTCTGTAATCTCCCAATGCAACCCAACACCACCACCTGACCGTATCATATTACCGACAACCACTACCACCAAGACAAAACTAACTGCTTCC
TTGCATTTTCAGGAATGGTCCCACACGCTGAATTTTATGACAACCTTATGGGAACTCCGTCTTCGGGGAGCCCACAGTTTCAGTCCAAAGCTGCAATCAT
ACATCCTCTTACCTTCTGATACCGAGGAGTTGAAAAGGAATTTAACGAAGAAGTTTAGTGATTATCTTAAAGGACTCATTAAGGGTGTGGGTAGTAATGT
TAATGATGATGAAAATGTGGTTGGGAGATGGCAGGCGAAAGTGAGTGAAAAAAGCGATGAGATTGCGCAGTTGATGAAGTTGCTTAAGGGGAGGAATAGA
ATGATGGGTTTTAGTGAGTTGAATGAGAGGAAAAAAGGGTTGATGGCGGAAAGGGACTTGATCGTGAAGAGATTGGAGGAATTTAGGGCTTCCATGAAGT
GTATTTTGAAGTATATTGAAGGAGGAAGGGAGGAGGAAGGGGAAAGGGGTTTAGAAGTGTTTGTGTTTGATGGGGAGATTGATTGGGAAAGGATTCATAG
ATTGGTTTTGAGGGAAATTAGGAGGTTGGTTGATGGGTTGCCTATTTATGCTTATAGGCAGCAGATTTTGGAGAAGATTCACAGCAAGCAGGTAATGGTT
TTGGTTGGGGAGACTGGTTCGGGGAAGAGTACACAGTTGGTTCAATTCCTTACTGATTCAGGAATACCTGGCAAGGAGTCCATTGTATGTACTCAGCCAC
GCAAGATTGCAGCCATCTCACTTGCTGATAGAGTCAATGAAGAAAGTAGGGGGTGCTATGAAAATAGTTCAGTCGTGAGTTATCCAACATTTTCATCCGC
ACAGCAGTTTGGTTCCAAAGTCATATTCATGACTGACCACTGTTTACTGCAGCACTACATGAATGATACCACTTTGTCTGGGATATCATGCATCATTGTT
GATGAGGCTCATGAAAGAAGCTTGAACACTGATCTTCTTTTGGCATTGATTAGAGGCTTACTTTGTGAGAGACCTGATTTAAGGCTAGTGATAATGTCAG
CAACAGCTGATGCAAAGCAGCTGTCAGATTATTTTTATGGTTGTGAAATCTTTCATGTTGAGGGAAGAAACTTTCCAGTAGAAGTCAGATACACTCCTTC
CTCTGAGGAAACTGCTTCTGGTATTGTTTCTCCATATGTATATGACACTTTGAGGATAACGACAGAGATTCATAAACAGGAGAGTGAAGGCACCATTCTT
GCCTTTTTGACTTCTCAGATGGAAGTAGAATGGGCTTGTGAGAAATTTGATGCTGCCTCTGCTGTTGCATTAGCCTTGCATGGAAAGCTTCCTTTCGAAG
AGCAATCTCGTGTTTTCCAAGATTTTGATGGGAAAAGAAAAGTTATATTTGCCACTAATCTCGCAGAGACATCACTTACAATTCCTGGGGTCAAGTATGT
GGTTGACTCTGGCTTGGCCAAAGAGAGTAAGTTTGAAGCAGCTACGGGCATGAATGTGCTTAGAGTGTGCAGGATCAGCCAGAGTTCTGCTAAACAGAGA
GCTGGTCGTGCTGGGAGAACGGTACCTGGAATATGCTATAGACTCTACACAGAATCTGACTTTGAGTCGATGTCTCCCAATCAAGAACCTGAGATTCGCA
GAGTTCATCTTGGTGTTGCTGTTCTGAGGATGCTTGCTTTGGGAATTAAGAATGTACAGGAGTTTGATTTTGTTGATGCACCTAGCACCAAAGCAATTGA
TATGGCCATTAGGAATCTTGTTCAGTTAGGTGCCATTACACTGAAAGGTGGCATCTGTGAACTAACTGAGGAAGGTCGCTACATGGTTAAAATGGGCATT
GAGCCTCGGCTCGGTAAGATCATTATCAGCAGCTTTCATTATCGCTTAGGTAAGGAGGGCCTTGTTCTTGCTGCTGTAATGGCAAATGCCAGTAGCATAT
TTTGCAGAGTTGGTAGTCAGGATGATAAGCAAAAGGCTGATTGTCTTAAGGTGCAGTTTTGCCATCGCAGTGGTGACCTCTTTACTGTGCTCTCTGTGTA
CAAAGAGTGGGAGGCTTTGCCTCAAGACAGGAGAAATAAATGGTGTTGGGAAAACAGCATCAATGCCAAATCCATGAGGAGATGCCAAGACACGGTCAAG
GAATTGGAATTTTGCCTTGAAAAGGAACTCACTGTTATTATTCCGTCATATTGGAATTGGAATCCTAATAAGTCTACCGAGCATGATAAATATTTGAAAA
AGATAATACTCTCAGCCCTTGCAGAAAATGTAGCCATGCACTCTGGACACGATCGACTTGGTTATGAAGTGGCATTGACCGGGCAGCACATTCAGCTGCA
TCCTTCATGTTCGCTGCTAGTATTTGGTGAAAAACCAAATTGGGTTGTCTTTGGTGAACTCCTCTCAATATCTAATGATTATTTGGTTTGTGTAACTGCT
TTTGACTTTGAATCATTGTCTACGCTTTGCCCCCCTCCCTTGTTTGATGCCCTTAAGATGGAAAGCCAGAAGTTGCAAGTGAAGGTGTTGACCAGTTTTG
GCAGTTCCCTGCTCAAAAGGTTTTGTGGTAAATCTAACAGCAATCTGCAGTCTCTTGTAACTTGTGTTCGGATTGCCTGTATGGATGAAAGGATTGGTGT
TGAGGTACATGTTGATCAGAATGAAATTCTGTTATTTGCAACAGCAGAGGACATGCAGAAGGTGTCCAGCCTTGTAAGTGAAGCTTTGGAGTGTGAGCGA
AAATGGTTGCATAATGAATGCATGGAGAAATTTTTGTATCTTGGAGCTGATTTGTCACCCATGGCACTTTTTGGAGCAGGAGCTGAGATTAAGTATTTGG
AACTAGAAAAGAGATGTTTGACTGTCAATGTATTTTTTTCTAATGCAAATACAATTGATGATAAGGAGGTTTTGATGTTTCTTGAGGAATATACATCTGG
TACTGTTTGTTCTGTTCACAAGTCTGTCGGAAGTGGACAAGAGGGTGATGAGAAGGAAAAGTGGGGCCAAATAACATTTCTCTCTCCTGATTCTGCCAGA
AAAGCTGCCCAGCTGAATGAAGTTGAATTCAAAGGCTCCAAGCTGAAGGTAGTTCCATCACAAACAATCATTGGAGGCAATCACAAAATGTTTTCATTTC
CTGCTGTTAAAGCAAAAATTGTTTGGCCTCGTAAAGTCAGTAAGGGGCTTGCCATTGTCAAATGTTATGTTCATGATGTTGATTTCATGATTTGTGATTT
CTCTAACCTGGAAATTGGAGGAAGGTATGTTCGGTGTTCAGCTGGTAGGTGTGTGGACTCGATTGTTGTCAGTGGATTTAGTAAAGAACTTTCTGAAGCT
GATATTTTACGTGCATTGAGGAGTGCCACAAACAGGAGAATCCTAGATTTCTTCATAGTAAGGGGAGACGCTGTTGAAAATCCTCCATTGGGTGCTTGTG
AAAAAGCACTTTTAAGAGAGATATCCCCCTTTATGCCTAAAAGGAATCCCCAAACTAGCTGCTGCAGAGTCCAAGTCTTTCCACCTGAATTAAAGGATGC
TTTTATGAAGGCTTTCATTACCTTTGATGGAAGATTGCACTTGGAAGCAGCAAGAGCTTTAGAGCATATGGAAGGGAAAGTATTACCTGGGTGCCATTCA
TGGCAGAAAATTAAGTGCGAGCAGATGTTTCATAGCTTGATATCCTGCTCAGCTAGTATCTATGTTGCAATCAAGAAGCAACTGGATTCTTTGCTTGCAA
GCTTCAGTCGTGTAAAGGGTGCAGAATGCAGTCTAGACAGGAATGAAAATGGTTCCTATCGAGTGAAAATATCTGCTAATGCTACAAAAACTGTTGCAGA
GCTAAGAAGACCTCTGGAAGAGCTTATGAGAGGACAGACCATAAACCATCCAAGCCTCACTCCAACTATTCTACAGCATCTGTTCTCTGGTCAAGGTATC
AATCTGATGAAGTCAATACAGAGAGAGACCGGTACCTACATTCACTTTGACAGGCGCAACTTCAATCTTAAGATTTTTGGTCGTCCAGACAAGATTGCTC
CAGCGCAGCAGAAATTTATTCAATTACTTCTGGCCAATCATGAAAGCAAGCAACTCGAGATCCACCTCAGAGGTGGAGATCTGCCCCCAGACTTGATGAA
GGAAGTAGTTAAGAGGTTTGGGCCAGATCTTCATGGTCTCAAAGAGAAGGTACCTGGGGCAGATCTTACACTTAGCACCCGTCACCATGTTATCTCTGTT
CATGGTGACAAAGAACTAAAGCAAAACGTGGAAGAAATAATTTTTGAGATGGCGCAAATGGGTTATGATTCAGCTGAGAGGCTTGATGGTGGAGATGCCT
GCCCTGTTTGTTTGTGTGAAGTTGAGGATGCTTACCGGCTTGAAAGCTGCGGGCATTTGTTTTGTCGAATGTGCTTGGTGGAGCAACTTGAATCAGCATT
GAAAAACTTGGATAGTTTCCCAATATGCTGCGCCCATGGGAGCTGCAGGGCTCCCATATTGCTGACAGACTTGAGGTCTCTCTTGTCGAGTGACAAGTTA
GAGGAACTCTTTAGGGCTTCTTTGGGGTCATTTGTAGCATCAAGTGGGGGAACCTACCGGTTTTGCCCATCTCCTGACTGCCCTTCAGTTTATAGAGTTG
CTGATCCTGTCACAGGTGGTGACCCATTTGTCTGCGGGGCTTGTTTTGCGGAGACTTGTACCAGGTGCCACTTGGATTATCATCCATACCTCTCGTGTAA
GAAATACATGGAGTTCAAGGAAGATCCTGATTTATCACTAAAGGACTGGTGCAAAGGAAAAGAGAATGTGAAAAGCTGTCCTGTCTGTGGATATACAATC
GAGAAAGGGGAAGGTTGCAACCATGTCGAGTGCAAGTGCGGCGGGCATGTCTGCTGGGTCTGTCTAGAGTCTTATAATAACAGCGAGGACTGCTATAACC
ATTTGAGGTCAATGCACGGGGGCATAGCTTGA
AA sequence
>Potri.005G071500.1 pacid=42803532 polypeptide=Potri.005G071500.1.p locus=Potri.005G071500 ID=Potri.005G071500.1.v4.1 annot-version=v4.1
MRKSSFHRTTTRRNPSPPRHHRPPLTTNNNNNNFPTTRNARRTSPNFIIHLHLDPTLAPSNKRPDPNTVNSVISQCNPTPPPDRIILPTTTTTKTKLTAS
LHFQEWSHTLNFMTTLWELRLRGAHSFSPKLQSYILLPSDTEELKRNLTKKFSDYLKGLIKGVGSNVNDDENVVGRWQAKVSEKSDEIAQLMKLLKGRNR
MMGFSELNERKKGLMAERDLIVKRLEEFRASMKCILKYIEGGREEEGERGLEVFVFDGEIDWERIHRLVLREIRRLVDGLPIYAYRQQILEKIHSKQVMV
LVGETGSGKSTQLVQFLTDSGIPGKESIVCTQPRKIAAISLADRVNEESRGCYENSSVVSYPTFSSAQQFGSKVIFMTDHCLLQHYMNDTTLSGISCIIV
DEAHERSLNTDLLLALIRGLLCERPDLRLVIMSATADAKQLSDYFYGCEIFHVEGRNFPVEVRYTPSSEETASGIVSPYVYDTLRITTEIHKQESEGTIL
AFLTSQMEVEWACEKFDAASAVALALHGKLPFEEQSRVFQDFDGKRKVIFATNLAETSLTIPGVKYVVDSGLAKESKFEAATGMNVLRVCRISQSSAKQR
AGRAGRTVPGICYRLYTESDFESMSPNQEPEIRRVHLGVAVLRMLALGIKNVQEFDFVDAPSTKAIDMAIRNLVQLGAITLKGGICELTEEGRYMVKMGI
EPRLGKIIISSFHYRLGKEGLVLAAVMANASSIFCRVGSQDDKQKADCLKVQFCHRSGDLFTVLSVYKEWEALPQDRRNKWCWENSINAKSMRRCQDTVK
ELEFCLEKELTVIIPSYWNWNPNKSTEHDKYLKKIILSALAENVAMHSGHDRLGYEVALTGQHIQLHPSCSLLVFGEKPNWVVFGELLSISNDYLVCVTA
FDFESLSTLCPPPLFDALKMESQKLQVKVLTSFGSSLLKRFCGKSNSNLQSLVTCVRIACMDERIGVEVHVDQNEILLFATAEDMQKVSSLVSEALECER
KWLHNECMEKFLYLGADLSPMALFGAGAEIKYLELEKRCLTVNVFFSNANTIDDKEVLMFLEEYTSGTVCSVHKSVGSGQEGDEKEKWGQITFLSPDSAR
KAAQLNEVEFKGSKLKVVPSQTIIGGNHKMFSFPAVKAKIVWPRKVSKGLAIVKCYVHDVDFMICDFSNLEIGGRYVRCSAGRCVDSIVVSGFSKELSEA
DILRALRSATNRRILDFFIVRGDAVENPPLGACEKALLREISPFMPKRNPQTSCCRVQVFPPELKDAFMKAFITFDGRLHLEAARALEHMEGKVLPGCHS
WQKIKCEQMFHSLISCSASIYVAIKKQLDSLLASFSRVKGAECSLDRNENGSYRVKISANATKTVAELRRPLEELMRGQTINHPSLTPTILQHLFSGQGI
NLMKSIQRETGTYIHFDRRNFNLKIFGRPDKIAPAQQKFIQLLLANHESKQLEIHLRGGDLPPDLMKEVVKRFGPDLHGLKEKVPGADLTLSTRHHVISV
HGDKELKQNVEEIIFEMAQMGYDSAERLDGGDACPVCLCEVEDAYRLESCGHLFCRMCLVEQLESALKNLDSFPICCAHGSCRAPILLTDLRSLLSSDKL
EELFRASLGSFVASSGGTYRFCPSPDCPSVYRVADPVTGGDPFVCGACFAETCTRCHLDYHPYLSCKKYMEFKEDPDLSLKDWCKGKENVKSCPVCGYTI
EKGEGCNHVECKCGGHVCWVCLESYNNSEDCYNHLRSMHGGIA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G10370 helicase domain-containing pro... Potri.005G071500 0 1
AT3G22970 Protein of unknown function (D... Potri.008G159800 4.69 0.7372
AT1G67560 ATLOX6, LOX6 Arabidopsis thaliana lipoxygen... Potri.008G178000 6.78 0.7049
AT2G31160 OBO1, LSH3 ORGAN BOUNDARY 1, LIGHT SENSIT... Potri.002G037500 7.74 0.7229
AT5G57250 Pentatricopeptide repeat (PPR)... Potri.018G143800 10.48 0.7561 CYP71.3
AT5G02950 Tudor/PWWP/MBT superfamily pro... Potri.008G044600 10.86 0.7654
AT1G24625 C2H2ZnF ZFP7 zinc finger protein 7 (.1) Potri.001G298700 13.49 0.7321
AT1G70620 cyclin-related (.1.2.3) Potri.008G186900 16.06 0.7514
AT1G65440 GTB1 global transcription factor gr... Potri.016G029200 17.40 0.7615
AT4G20740 EMB3131 EMBRYO DEFECTIVE 3131, Pentatr... Potri.003G203100 20.59 0.7463
AT2G33170 Leucine-rich repeat receptor-l... Potri.001G053400 20.78 0.7222

Potri.005G071500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.